3RQD
Ideal thiolate-zinc coordination geometry in depsipeptide binding to histone deacetylase 8
PDB DOI: 10.2210/pdb3rqd/pdb
Classification: HYDROLASE/HYDROLASE INHIBITOR Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2011-04-28 Deposition Author(s): Christianson, D.W. , Cole, K.E. , Dowling, D.P.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.143 Å
Ideal thiolate-zinc coordination geometry in depsipeptide binding to histone deacetylase 8
Christianson, D.W. , Cole, K.E. , Dowling, D.P.
Primary Citation of Related Structures: 3RQD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone deacetylase 8 | A | 389 | Homo Sapiens , Synthetic Construct | MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRGSHHHHHH |
| Histone deacetylase 8 | B | 389 | Homo Sapiens , Synthetic Construct | MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRGSHHHHHH |
| Largazole | C | 5 | Homo Sapiens , Synthetic Construct | XGCCV |
| Largazole | D | 5 | Homo Sapiens , Synthetic Construct | XGCCV |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2011-04-28 Deposition Author(s): Christianson, D.W. , Cole, K.E. , Dowling, D.P.