3PZP
Human dna polymerase kappa extending opposite a cis-syn thymine dimer
PDB DOI: 10.2210/pdb3pzp/pdb
Classification: TRANSFERASE/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2010-12-14 Deposition Author(s): Aggarwal, A.K. , Johnson, R.E. , Lone, S. , Prakash, L. , Prakash, S. , Silverstein, T.D. , Vasquez-Del Carpio, R.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.336 Å
Human dna polymerase kappa extending opposite a cis-syn thymine dimer
Aggarwal, A.K. , Johnson, R.E. , Lone, S. , Prakash, L. , Prakash, S. , Silverstein, T.D. , Vasquez-Del Carpio, R.
Primary Citation of Related Structures: 3PZP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase kappa | A | 517 | Homo Sapiens , Synthetic Construct | GPGGDPHMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQRS |
| DNA polymerase kappa | B | 517 | Homo Sapiens , Synthetic Construct | GPGGDPHMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQRS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*A)-3' | p | 13 | NA | GGGGGAAGGACCA |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*A)-3' | q | 13 | NA | GGGGGAAGGACCA |
| 5'-D(*TP*TP*CP*CP*(TTD)P*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | t | 17 | NA | TTCCTGGTCCTTCCCCC |
| 5'-D(*TP*TP*CP*CP*(TTD)P*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | u | 17 | NA | TTCCTGGTCCTTCCCCC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2010-12-14 Deposition Author(s): Aggarwal, A.K. , Johnson, R.E. , Lone, S. , Prakash, L. , Prakash, S. , Silverstein, T.D. , Vasquez-Del Carpio, R.