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3PNC

Ternary crystal structure of a polymerase lambda variant with a gt mispair at the primer terminus and sodium at catalytic metal site

PDB DOI: 10.2210/pdb3pnc/pdb

Classification: LYASE,TRANSFERASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2010-11-18
Deposition Author(s): Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

3pnc
Literature

Ternary crystal structure of a polymerase lambda variant with a gt mispair at the primer terminus and sodium at catalytic metal site

Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.

Primary Citation of Related Structures: 3PNC


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 329 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*AP*GP*TP*AP*G)-3' b 6 NA CAGTAG
5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3' c 11 NA CGGCCTTACTG
5'-D(*GP*CP*CP*G)-3' d 4 NA GCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-11-18
Deposition Author(s): Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.