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3PML

Crystal structure of a polymerase lambda variant with a dgtp analog opposite a templating t

PDB DOI: 10.2210/pdb3pml/pdb

Classification: LYASE,TRANSFERASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2010-11-17
Deposition Author(s): Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.6 Å

3pml
Literature

Crystal structure of a polymerase lambda variant with a dgtp analog opposite a templating t

Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.

Primary Citation of Related Structures: 3PML


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 329 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW
DNA polymerase lambda B 329 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3' c 11 NA CGGCTGTACTG
5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3' e 11 NA CGGCTGTACTG
5'-D(P*GP*CP*CP*G)-3' d 4 NA GCCG
5'-D(P*GP*CP*CP*G)-3' g 4 NA GCCG
5'-D(*CP*AP*GP*TP*AP*C)-3' f 6 NA CAGTAC
5'-D(*CP*AP*GP*TP*AP*C)-3' h 6 NA CAGTAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-11-17
Deposition Author(s): Bebenek, K. , Kunkel, T.A. , Pedersen, L.C.