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FASTA Sequence PDB Format mmCIF Format
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3KHH

Dpo4 extension ternary complex with a c base opposite the 2-aminofluorene-guanine [af]g lesion

PDB DOI: 10.2210/pdb3khh/pdb

Classification: TRANSFERASE/DNA
Organism(s): Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-10-30
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

3khh
Literature

Dpo4 extension ternary complex with a c base opposite the 2-aminofluorene-guanine [af]g lesion

Malinina, L. , Patel, D.J. , Rechkoblit, O.

Primary Citation of Related Structures: 3KHH


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 341 Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI
DNA polymerase IV B 341 Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' d 13 NA GTTGGATGGTAGC
5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' h 13 NA GTTGGATGGTAGC
5'-D(*CP*CP*TP*A*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3' e 19 NA CTAACGCTACCATCCAACC
5'-D(*CP*CP*TP*A*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3' j 19 NA CTAACGCTACCATCCAACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-10-30
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.