3J16
Models of ribosome-bound dom34p and rli1p and their ribosomal binding partners
PDB DOI: 10.2210/pdb3j16/pdb
Classification: RIBOSOME Organism(s): Saccharomyces Cerevisiae
Deposited: 2011-12-12 Deposition Author(s): Anger, A.M. , Armache, J.-P. , Becker, T. , Beckmann, R. , Berninghausen, O. , Daberkow, I. , Franckenberg, S. , Green, R. , Hopfner, K.-P. , Karcher, A. , Shoemaker, C.J. , Sieber, H. , Thomm, M. , Ungewickell, C. , Wickles, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 7.2 Å
Models of ribosome-bound dom34p and rli1p and their ribosomal binding partners
Anger, A.M. , Armache, J.-P. , Becker, T. , Beckmann, R. , Berninghausen, O. , Daberkow, I. , Franckenberg, S. , Green, R. , Hopfner, K.-P. , Karcher, A. , Shoemaker, C.J. , Sieber, H. , Thomm, M. , Ungewickell, C. , Wickles, S.
Primary Citation of Related Structures: 3J16
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Dom34p | A | 386 | Saccharomyces Cerevisiae | MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDEAGKKKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDLDEDDGEE |
| 60S ribosomal protein L11 | H | 165 | Saccharomyces Cerevisiae | MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPEN |
| 40S ribosomal protein S24E | I | 137 | Saccharomyces Cerevisiae | MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV |
| 40S ribosomal protein S24-A | D | 135 | Saccharomyces Cerevisiae | MSDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD |
| Rli1p | B | 608 | Saccharomyces Cerevisiae | MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLDNTGI |
| 60S ribosomal protein L6 | F | 191 | Saccharomyces Cerevisiae | MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFITEDL |
| 40S ribosomal protein S30E | E | 63 | Saccharomyces Cerevisiae | MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPSVQ |
| 60S ribosomal protein L10 | G | 312 | Saccharomyces Cerevisiae | MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD |
| 40S ribosomal protein S6E | C | 236 | Saccharomyces Cerevisiae | MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLKA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 28S ribosomal RNA | j | 233 | NA | CUCAAAGAUUAAGCCAUGUGGUAAUUCUAAUCCAAGGAAAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGAGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCUGGUGGUGCAUGGCAGGUCUGUGAUGCCCUUACACACCGCCCGUCGCUAGUACUAAAAGUCGUAACAAGGU |
| 18S ribosomal RNA | k | 155 | NA | CCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCGGAGUAACUAUGACUCUCGCCUCGUCAUCUAAUUAAGUCAAGCGUUCAUAGCGACAUUGAUUGUUCACCCACUGAACUUAGUACGAGAGGAACAGUUC |
| P-site tRNA | l | 75 | NA | UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2011-12-12 Deposition Author(s): Anger, A.M. , Armache, J.-P. , Becker, T. , Beckmann, R. , Berninghausen, O. , Daberkow, I. , Franckenberg, S. , Green, R. , Hopfner, K.-P. , Karcher, A. , Shoemaker, C.J. , Sieber, H. , Thomm, M. , Ungewickell, C. , Wickles, S.