3J0L
Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 9.8a cryo-em map: classic pre state 1
PDB DOI: 10.2210/pdb3j0l/pdb
Classification: RIBOSOME Organism(s): Oryctolagus Cuniculus
Deposited: 2011-10-04 Deposition Author(s): Altman, R. , Blanchard, S. , Budkevich, T. , Giesebrecht, J. , Mielke, T. , Munro, J. , Nierhaus, K. , Spahn, C.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 9.8 Å
Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 9.8a cryo-em map: classic pre state 1
Altman, R. , Blanchard, S. , Budkevich, T. , Giesebrecht, J. , Mielke, T. , Munro, J. , Nierhaus, K. , Spahn, C.M.
Primary Citation of Related Structures: 3J0L
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 40S ribosomal RNA fragment | a | 48 | NA | GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA |
| 40S ribosomal RNA fragment | h | 111 | NA | CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA |
| 60S ribosomal RNA fragment | 1 | 50 | NA | GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU |
| 60S ribosomal RNA fragment | 2 | 112 | NA | GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG |
| 60S ribosomal RNA fragment | 3 | 12 | NA | GCCAGUGAAAUA |
| 60S ribosomal RNA fragment | 4 | 14 | NA | GGCUGGGGCGGCAC |
| 60S ribosomal RNA fragment | 5 | 6 | NA | CCUAAG |
| 60S ribosomal RNA fragment | 6 | 19 | NA | AGAACAAAAGGGUAAAAGC |
| 60S ribosomal RNA fragment | 7 | 50 | NA | GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU |
| 60S ribosomal RNA fragment | 8 | 20 | NA | GACCGUCGUGAGACAGGUUA |
| 40S ribosomal RNA fragment | f | 21 | NA | GGUGGUGGUGCAUGGCCGUUC |
| mRNA fragment | y | 3 | NA | UUC |
| mRNA fragment | v | 3 | NA | UUC |
| mRNA fragment | w | 2 | NA | AA |
| 40S ribosomal RNA fragment | c | 17 | NA | GACGAUCAGAUACCGUC |
| 40S ribosomal RNA fragment | d | 7 | NA | CGAGGAA |
| 40S ribosomal RNA fragment | e | 5 | NA | UCCCU |
| 40S ribosomal RNA fragment | g | 13 | NA | GCACGCGCGUUAC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ribosomal protein S5 | T | 192 | Oryctolagus Cuniculus | TQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR |
| Ribosomal protein S14 | K | 140 | Oryctolagus Cuniculus | EVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL |
| Ribosomal protein S23 | L | 141 | Oryctolagus Cuniculus | GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEKR |
| Ribosomal protein S30 | X | 68 | Oryctolagus Cuniculus | TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHAGKKEKMDAAA |
| Ribosomal protein S15 | S | 125 | Oryctolagus Cuniculus | FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGK |
| Ribosomal protein L10a | B | 213 | Oryctolagus Cuniculus | ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL |
| Ribosomal protein L10 | J | 219 | Oryctolagus Cuniculus | RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2011-10-04 Deposition Author(s): Altman, R. , Blanchard, S. , Budkevich, T. , Giesebrecht, J. , Mielke, T. , Munro, J. , Nierhaus, K. , Spahn, C.M.