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3IN5

Structure of human dna polymerase kappa inserting datp opposite an 8-oxog dna lesion

PDB DOI: 10.2210/pdb3in5/pdb

Classification: Transferase/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2009-08-11
Deposition Author(s): Aggarwal, A.K. , Silverstein, T.D. , Vasquez-Del Carpio, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.2 Å

3in5
Literature

Structure of human dna polymerase kappa inserting datp opposite an 8-oxog dna lesion

Aggarwal, A.K. , Silverstein, T.D. , Vasquez-Del Carpio, R.

Primary Citation of Related Structures: 3IN5


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase kappa A 508 Homo Sapiens , Synthetic Construct MGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQ
DNA polymerase kappa B 508 Homo Sapiens , Synthetic Construct MGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3') p 13 NA GGGGGAAGGACTC
DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3') q 13 NA GGGGGAAGGACTC
DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') t 18 NA CCTAGGAGTCCTTCCCCC
DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') u 18 NA CCTAGGAGTCCTTCCCCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-08-11
Deposition Author(s): Aggarwal, A.K. , Silverstein, T.D. , Vasquez-Del Carpio, R.