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3I8D

The pairing geometry of the hydrophobic thymine analog 2,4-difluorotoluene in duplex dna as analyzed by x-ray crystallography

PDB DOI: 10.2210/pdb3i8d/pdb

Classification: HYDROLASE/DNA
Organism(s): Streptomyces Nogalater , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-07-09
Deposition Author(s): Egli, M. , Pallan, P.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å

3i8d
Literature

The pairing geometry of the hydrophobic thymine analog 2,4-difluorotoluene in duplex dna as analyzed by x-ray crystallography

Egli, M. , Pallan, P.S.

Primary Citation of Related Structures: 3I8D


Proteins
Molecule Chains Sequence Length Organism Sequence
Ribonuclease H A 132 Streptomyces Nogalater , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY
Ribonuclease H C 132 Streptomyces Nogalater , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3' b 12 NA CGCGAATNCGCG
5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3' d 12 NA CGCGAATNCGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-07-09
Deposition Author(s): Egli, M. , Pallan, P.S.