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3GDX

Dna polymerase beta with a gapped dnd substrate and dtmp(cf2)pp

PDB DOI: 10.2210/pdb3gdx/pdb

Classification: TRANSFERASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-02-24
Deposition Author(s): Batra, V.K. , Pedersen, L.C. , Wilson, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

3gdx
Literature

Dna polymerase beta with a gapped dnd substrate and dtmp(cf2)pp

Batra, V.K. , Pedersen, L.C. , Wilson, S.H.

Primary Citation of Related Structures: 3GDX


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase beta A 326 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' t 16 NA CCGACAGCGCATCAGC
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3' p 10 NA GCTGATGCGC
5'-D(P*GP*TP*CP*GP*G)-3' d 5 NA GTCGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-02-24
Deposition Author(s): Batra, V.K. , Pedersen, L.C. , Wilson, S.H.