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3C2K

Dna polymerase beta with a gapped dna substrate and dumpnpp with manganese in the active site

PDB DOI: 10.2210/pdb3c2k/pdb

Classification: TRANSFERASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2008-01-25
Deposition Author(s): Batra, V.K. , Beard, W.A. , Pedersen, L.C. , Shock, D.D. , Wilson, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

3c2k
Literature

Dna polymerase beta with a gapped dna substrate and dumpnpp with manganese in the active site

Batra, V.K. , Beard, W.A. , Pedersen, L.C. , Shock, D.D. , Wilson, S.H.

Primary Citation of Related Structures: 3C2K


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3') t 16 NA CCGACAGCGCATCAGC
DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3') p 10 NA GCTGATGCGC
DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3') d 5 NA GTCGG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase beta A 335 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-01-25
Deposition Author(s): Batra, V.K. , Beard, W.A. , Pedersen, L.C. , Shock, D.D. , Wilson, S.H.