2ZKD
Crystal structure of the sra domain of mouse np95 in complex with hemi-methylated cpg dna
PDB DOI: 10.2210/pdb2zkd/pdb
Classification: LIGASE Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2008-03-19 Deposition Author(s): Arita, K. , Ariyoshi, M. , Nakamura, Y. , Shirakawa, M. , Tochio, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.6 Å
Crystal structure of the sra domain of mouse np95 in complex with hemi-methylated cpg dna
Arita, K. , Ariyoshi, M. , Nakamura, Y. , Shirakawa, M. , Tochio, H.
Primary Citation of Related Structures: 2ZKD
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3') | c | 12 | NA | CTACCGGATTGC |
| DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3') | e | 12 | NA | CTACCGGATTGC |
| DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3') | d | 12 | NA | GCAATCCGGTAG |
| DNA (5'-D(*DGP*DCP*DAP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DAP*DG)-3') | f | 12 | NA | GCAATCCGGTAG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| E3 ubiquitin-protein ligase UHRF1 | A | 210 | Mus Musculus , Synthetic Construct | SGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPE |
| E3 ubiquitin-protein ligase UHRF1 | B | 210 | Mus Musculus , Synthetic Construct | SGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPE |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2008-03-19 Deposition Author(s): Arita, K. , Ariyoshi, M. , Nakamura, Y. , Shirakawa, M. , Tochio, H.