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2XY7

Crystal structure of a salicylic aldehyde base in the pre-insertion site of fragment dna polymerase i from bacillus stearothermophilus

PDB DOI: 10.2210/pdb2xy7/pdb

Classification: TRANSFERASE/DNA
Organism(s): Coprinopsis Cinerea (Strain Okayama-7 / 130 / Atcc Mya-4618 / Fgsc 9003) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2010-11-15
Deposition Author(s): Carell, T. , Kaul, C. , Mueller, M. , Schneider, S. , Wagner, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.05 Å

2xy7
Literature

Crystal structure of a salicylic aldehyde base in the pre-insertion site of fragment dna polymerase i from bacillus stearothermophilus

Carell, T. , Kaul, C. , Mueller, M. , Schneider, S. , Wagner, M.

Primary Citation of Related Structures: 2XY7


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA POLYMERASE I A 580 Coprinopsis Cinerea (Strain Okayama-7 / 130 / Atcc Mya-4618 / Fgsc 9003) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AKMAFTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP)-3' b 10 NA GCCTGACTCG
5'-D(*SAYP*CP*GP*AP*GP*TP*CP*AP*GP*GP*CP)-3' c 11 NA XCGAGTCAGGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-11-15
Deposition Author(s): Carell, T. , Kaul, C. , Mueller, M. , Schneider, S. , Wagner, M.