2W9B
Binary complex of dpo4 bound to n2,n2-dimethyl-deoxyguanosine modified dna
PDB DOI: 10.2210/pdb2w9b/pdb
Classification: TRANSFERASE/DNA Organism(s): Sulfolobus Solfataricus , Synthetic Construct
Deposited: 2009-01-22 Deposition Author(s): Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D. , Rizzo, C.J. , Zhang, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.28 Å
Binary complex of dpo4 bound to n2,n2-dimethyl-deoxyguanosine modified dna
Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D. , Rizzo, C.J. , Zhang, H.
Primary Citation of Related Structures: 2W9B
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA POLYMERASE IV | A | 358 | Sulfolobus Solfataricus , Synthetic Construct | HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKARYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT |
| DNA POLYMERASE IV | B | 358 | Sulfolobus Solfataricus , Synthetic Construct | HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3' | c | 14 | NA | GGGGGAAGGATTCC |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3' | d | 14 | NA | GGGGGAAGGATTCC |
| 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | e | 18 | NA | TCATGGAATCCTTCCCCC |
| 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | f | 18 | NA | TCATGGAATCCTTCCCCC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-01-22 Deposition Author(s): Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D. , Rizzo, C.J. , Zhang, H.