2VJV
Crystal structure of the is608 transposase in complex with left end 26-mer dna hairpin and a 6-mer dna representing the left end cleavage site
PDB DOI: 10.2210/pdb2vjv/pdb
Classification: DNA BINDING PROTEIN Organism(s): Helicobacter Pylori , Synthetic Construct
Deposited: 2007-12-13 Deposition Author(s): Barabas, O. , Chandler, M. , Dyda, F. , Guynet, C. , Hickman, A.B. , Ronning, D.R. , Ton-Hoang, B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.9 Å
Crystal structure of the is608 transposase in complex with left end 26-mer dna hairpin and a 6-mer dna representing the left end cleavage site
Barabas, O. , Chandler, M. , Dyda, F. , Guynet, C. , Hickman, A.B. , Ronning, D.R. , Ton-Hoang, B.
Primary Citation of Related Structures: 2VJV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| TRANSPOSASE ORFA | A | 159 | Helicobacter Pylori , Synthetic Construct | GSAMASNAVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL |
| TRANSPOSASE ORFA | B | 159 | Helicobacter Pylori , Synthetic Construct | GSAMASNAVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3' | c | 26 | NA | AAAGCCCCTAGCTTTTAGCTATGGGG |
| 5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3' | d | 26 | NA | AAAGCCCCTAGCTTTTAGCTATGGGG |
| 5'-D(*DT*DA*DT*DT*DA*DCP)-3' | e | 6 | NA | TATTAC |
| 5'-D(*DT*DA*DT*DT*DA*DCP)-3' | f | 6 | NA | TATTAC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2007-12-13 Deposition Author(s): Barabas, O. , Chandler, M. , Dyda, F. , Guynet, C. , Hickman, A.B. , Ronning, D.R. , Ton-Hoang, B.