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2OWO

Last stop on the road to repair: structure of e.coli dna ligase bound to nicked dna-adenylate

PDB DOI: 10.2210/pdb2owo/pdb

Classification: LIGASE/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2007-02-16
Deposition Author(s): Nair, P.A. , Nandakumar, J. , Shuman, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

2owo
Literature

Last stop on the road to repair: structure of e.coli dna ligase bound to nicked dna-adenylate

Nair, P.A. , Nandakumar, J. , Shuman, S.

Primary Citation of Related Structures: 2OWO


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
26-MER b 26 NA CATTCCGATAGTGGGGTCGCAATTGT
5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3' c 13 NA ACAATTGCGACCC
5'-D(*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*G)-3' d 13 NA CACTATCGGAATG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase A 671 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-02-16
Deposition Author(s): Nair, P.A. , Nandakumar, J. , Shuman, S.