2OM7
Structural basis for interaction of the ribosome with the switch regions of gtp-bound elongation factors
PDB DOI: 10.2210/pdb2om7/pdb
Classification: RIBOSOME Organism(s): Thermus Thermophilus
Deposited: 2007-01-21 Deposition Author(s): Connell, S.R. , Dabrowski, M. , Fucini, P. , Giesebrecht, J. , Mielke, T. , Rost, M. , Schueler, M. , Spahn, C.M.T. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 7.3 Å
Structural basis for interaction of the ribosome with the switch regions of gtp-bound elongation factors
Connell, S.R. , Dabrowski, M. , Fucini, P. , Giesebrecht, J. , Mielke, T. , Rost, M. , Schueler, M. , Spahn, C.M.T. , Wilson, D.N.
Primary Citation of Related Structures: 2OM7
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Fragment of 16S rRNA (h14) | a | 12 | NA | CUCCUACGGGAG |
| p/E-tRNA | m | 74 | NA | UCCGUGAUAACAAAGCGGUUAUGUACCGGAUUUUUAUUCCGGCUAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA |
| Fragment of 16S rRNA (h15) | b | 28 | NA | UUCCGCAAUGGGCGCAAGCCUGACGGAG |
| Fragment of 16S rRNA (h44) | c | 96 | NA | GCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAAC |
| 16S ribosomal RNA (H5) | d | 303 | NA | GACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUU |
| Fragment of23S rRNA (H95) | f | 29 | NA | CUCUUCCUAGUACGAGAGGACCGGAAGGG |
| Fragment of23S rRNA (H68) | g | 54 | NA | GUGCCGGAAGGUCAAGGGGAGGGGUGCAAGCCCCGAACCGAAGCCCCGGUGAAC |
| Fragment of23S rRNA (H89) | h | 42 | NA | GCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGC |
| Fragment of23S rRNA (H42-44) | i | 58 | NA | GCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGGU |
| Fragment of23S rRNA (H76) | j | 102 | NA | GCUCUUGGUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCGGCUGGGGGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S12 | E | 135 | Thermus Thermophilus | MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK |
| 50S ribosomal protein L1 | K | 229 | Thermus Thermophilus | MPKHGKRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS |
| Elongation factor G | L | 691 | Thermus Thermophilus | MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ |
| 30S ribosomal protein S2 | N | 256 | Thermus Thermophilus | MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2007-01-21 Deposition Author(s): Connell, S.R. , Dabrowski, M. , Fucini, P. , Giesebrecht, J. , Mielke, T. , Rost, M. , Schueler, M. , Spahn, C.M.T. , Wilson, D.N.