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2JEF

The molecular basis of selectivity of nucleotide triphosphate incorporation opposite o6-benzylguanine by sulfolobus solfataricus dna polymerase iv: steady-state and pre-steady-state and x-ray crystallography of correct and incorrect pairing

PDB DOI: 10.2210/pdb2jef/pdb

Classification: TRANSFERASE/DNA
Organism(s): Chaetomium Thermophilum Var. Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2007-01-17
Deposition Author(s): Angel, K.C. , Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.17 Å

2jef
Literature

The molecular basis of selectivity of nucleotide triphosphate incorporation opposite o6-benzylguanine by sulfolobus solfataricus dna polymerase iv: steady-state and pre-steady-state and x-ray crystallography of correct and incorrect pairing

Angel, K.C. , Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D.

Primary Citation of Related Structures: 2JEF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA POLYMERASE IV A 358 Chaetomium Thermophilum Var. Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3' p 14 NA GGGGGAAGGATTCC
5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3' t 18 NA TCACNGAATCCTTCCCCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-01-17
Deposition Author(s): Angel, K.C. , Egli, M. , Eoff, R.L. , Guengerich, F.P. , Kosekov, I.D.