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FASTA Sequence PDB Format mmCIF Format
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2J8U

Large cdr3a loop alteration as a function of mhc mutation.

PDB DOI: 10.2210/pdb2j8u/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2006-10-27
Deposition Author(s): Benhar, Y.P. , Biddison, W. , Collins, E.J. , Miller, P.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.88 Å

2j8u
Literature

Large cdr3a loop alteration as a function of mhc mutation.

Benhar, Y.P. , Biddison, W. , Collins, E.J. , Miller, P.J.

Primary Citation of Related Structures: 2J8U


Proteins
Molecule Chains Sequence Length Organism Sequence
HLA class I histocompatibility antigen, A-2 alpha chain A 275 Homo Sapiens , Mus Musculus , Synthetic Construct GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRAVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
HLA class I histocompatibility antigen, A-2 alpha chain H 275 Homo Sapiens , Mus Musculus , Synthetic Construct GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRAVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
Beta-2-microglobulin B 100 Homo Sapiens , Mus Musculus , Synthetic Construct MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Beta-2-microglobulin I 100 Homo Sapiens , Mus Musculus , Synthetic Construct MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
SELF-PEPTIDE P1049 C 9 Homo Sapiens , Mus Musculus , Synthetic Construct ALWGFFPVL
SELF-PEPTIDE P1049 J 9 Homo Sapiens , Mus Musculus , Synthetic Construct ALWGFFPVL
AHIII TCR ALPHA CHAIN E 194 Homo Sapiens , Mus Musculus , Synthetic Construct MDSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKET
AHIII TCR ALPHA CHAIN L 194 Homo Sapiens , Mus Musculus , Synthetic Construct MDSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKET
AHIII TCR BETA CHAIN F 238 Homo Sapiens , Mus Musculus , Synthetic Construct MEAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSDWVSYEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYALSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRA
AHIII TCR BETA CHAIN M 238 Homo Sapiens , Mus Musculus , Synthetic Construct MEAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSDWVSYEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYALSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-10-27
Deposition Author(s): Benhar, Y.P. , Biddison, W. , Collins, E.J. , Miller, P.J.