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2IBK

Bypass of major benzopyrene-dg adduct by y-family dna polymerase with unique structural gap

PDB DOI: 10.2210/pdb2ibk/pdb

Classification: TRANSFERASE/DNA
Organism(s): Sulfolobus Solfataricus , Synthetic Construct

Deposited: 2006-09-11
Deposition Author(s): Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å

2ibk
Literature

Bypass of major benzopyrene-dg adduct by y-family dna polymerase with unique structural gap

Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.

Primary Citation of Related Structures: 2IBK


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3' d 14 NA GGGGGAAGGATTAT
5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' e 17 NA TCATGAATCCTTCCCCC

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 352 Sulfolobus Solfataricus , Synthetic Construct MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-09-11
Deposition Author(s): Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.