PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

2IBK

Bypass of major benzopyrene-dg adduct by y-family dna polymerase with unique structural gap

PDB DOI: 10.2210/pdb2ibk/pdb

Classification: TRANSFERASE/DNA
Organism(s): Paramecium Tetraurelia Strain D4-2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2006-09-11
Deposition Author(s): Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å

2ibk
Literature

Bypass of major benzopyrene-dg adduct by y-family dna polymerase with unique structural gap

Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.

Primary Citation of Related Structures: 2IBK


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3' d 14 NA GGGGGAAGGATTAT
5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' e 17 NA TCATGAATCCTTCCCCC

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 352 Paramecium Tetraurelia Strain D4-2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-09-11
Deposition Author(s): Bauer, J. , Jerina, D.M. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H.