2FTC
Structural model for the large subunit of the mammalian mitochondrial ribosome
PDB DOI: 10.2210/pdb2ftc/pdb
Classification: RIBOSOME Organism(s): Parengyodontium Album
Deposited: 2006-01-24 Deposition Author(s): Agrawal, R.K. , Gutell, R.R. , Harvey, S.C. , Mears, J.A. , Richardson, P.E. , Sharma, M.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 12.1 Å
Structural model for the large subunit of the mammalian mitochondrial ribosome
Agrawal, R.K. , Gutell, R.R. , Harvey, S.C. , Mears, J.A. , Richardson, P.E. , Sharma, M.R.
Primary Citation of Related Structures: 2FTC
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Mitochondrial 16S ribosomal RNA | r | 1568 | NA | ACUAGACCUAGCCCAAAGAUACCCUCUCGACUAAACAACCAAGAUAGAAUAAAACAAAACAUUUAAUCCCAAUUUAAAGUAUAGGAGAUAGAAAUCUAAGUACGGCGCUAUAGAGAAAGUACCGCAAGGGAACGAUGAAAGAAAAAAACUAAAAGUAUAAAAAAGCAAAGAUUACCCCUUGUACCUUUUGCAUAAUGAAUUAACUAGUAUAAGACUUAACAAAAUGAAUUUUAGCUAAGCAGCCCGAAACCAGACGAGCUACUCACAAACAGUUUACCAAGAACUAACUCAUCUAUGUGGCAAAAUAGUGAGAAGAUUUGUAAGUAGAGGUGACAUGCCUAACGAGCCUGGUGAUAGCUGGUUGUCCAGAAAAUGAAUCUAAGUUCAGCUUUAAAGAUACCAAAAAUUCAAAUAAACCCCACUGUAGCUUUAAAAGUUAGUCUAAAAAGGUACAGCCUUUUAGAAACGGAUACAACCUUGACUAGAGAGUAAAAUUUAACACUACCAUAGUAGGCCUAAAAGCAGCCAUCAAUUAAGAAAGCGUUAAAGCUCAACAACAAAAAUUAAAUAGAUUCCAACAACAAAUGAUUAACUCCUAGCCCCAAUACUGGACUAAUCUAUUAUAGAAUAGAAGCAAUAAUGUUAAUAUGAGUAACAAGAAAAAUUUUCUCCUUGCAUAAGUCUAAGUCAGUGCCUGAUAAUACUCUGACCACUAACAGUCAAUAAAAAUAAUCCAACAAUAAACAAUUUAUUGAUUAUACUGUUAACCCAACACAGGAGUGCAUCUAAGGAAAGAUUAAAAGAAGUAAAAGGAACUCGGCAAACACAAACCCCGCCUGUUUACCAAAAACAUCACCUCCAGCAUUCCCAGUAUUGGAGGCAUUGCCUGCCCAGUGACAACUGUUUAACGGCCGCGGUAUCCUGACCGUGCAAAGGUAGCAUAAUCAUUUGUUCUCUAAAUAAGGACUUGUAUGAAUGGCCGCACGAGGGUUUUACUGUCUCUUACUUCCAAUCAGUGAAAUUGACCUUCCCGUGAAGAGGCGGGAAUGCACAAAUAAGACGAGAAGACCCUAUGGAGCUUUAACUAACCAACCCAAAGAGAAUAGAUUUAACCAUUAAGGAAUAACAACAAUCUCCAUGAGUUGGUAGUUUCGGUUGGGGUGACCUCGGAGAAUAAAAAAUCCUCCGAGCGAUUUUAAAGACUAGACCCACAAGUCAAAUCACUCUAUCGCUCAUUGAUCCAAAAACUUGAUCAACGGAACAAGUUACCCUAGGGAUAACAGCGCAAUCCUAUUCAAGAGUCCAUAUCGACAAUAGGGUUUACGACCUCGAUGUUGGAUCAGGACAUCCUGAUGGUGCAACCGCUAUCAAAGGUUCGUUUGUUCAACGAUUAAAGUCCUACGUGAUCUGAGUUCAGACCGGAGUAAUCCAGGUCGGUUUCUAUCUAUUACGUAUUUCUCCCAGUACGAAAGGACAAGAGAAAUAAGGCCAACUUUAAAUCAAGCGCCUUAAGACAACCAAUGAUAACAUCUCAACUGACAACACAAAACCCUGCCCUAGAACAGGGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Mitochondrial ribosomal protein L17 | J | 116 | Parengyodontium Album | HGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYK |
| 39S ribosomal protein L19, mitochondrial | K | 98 | Parengyodontium Album | IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMK |
| MRPL20 protein | L | 118 | Parengyodontium Album | LWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRRH |
| mitochondrial ribosomal protein L22 isoform a | M | 110 | Parengyodontium Album | HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP |
| mitochondrial ribosomal protein L24 | N | 96 | Parengyodontium Album | GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII |
| Mitochondrial 39S ribosomal protein L27 | O | 69 | Parengyodontium Album | ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY |
| mitochondrial ribosomal protein L33 isoform a | P | 52 | Parengyodontium Album | AKSKSKNILVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQRVLFVEKK |
| 39S ribosomal protein L34, mitochondrial | Q | 38 | Parengyodontium Album | YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL |
| Mitochondrial ribosomal protein L1 | A | 189 | Parengyodontium Album | LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLLKIDPLL |
| mitochondrial ribosomal protein L2 | B | 136 | Parengyodontium Album | VIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG |
| Mitochondrial 39S ribosomal protein L3 | C | 211 | Parengyodontium Album | RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPA |
| mitochondrial ribosomal protein L4 isoform a | D | 175 | Parengyodontium Album | HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLED |
| 39S ribosomal protein L12, mitochondrial | E | 137 | Parengyodontium Album | PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
| 39S ribosomal protein L12, mitochondrial | F | 137 | Parengyodontium Album | PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
| 39S ribosomal protein L11, mitochondrial | G | 145 | Parengyodontium Album | KPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK |
| 39S ribosomal protein L13, mitochondrial | H | 148 | Parengyodontium Album | MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQP |
| Mitochondrial ribosomal protein L16 | I | 118 | Parengyodontium Album | DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2006-01-24 Deposition Author(s): Agrawal, R.K. , Gutell, R.R. , Harvey, S.C. , Mears, J.A. , Richardson, P.E. , Sharma, M.R.