2DYS
Bovine heart cytochrome c oxidase modified by dccd
PDB DOI: 10.2210/pdb2dys/pdb
Classification: OXIDOREDUCTASE Organism(s): Parengyodontium Album
Deposited: 2006-09-16 Deposition Author(s): Aoyama, H. , Kurauchi, T. , Mizushima, T. , Muramoto, K. , Shinzawa-Itoh, K. , Tsukihara, T. , Yamashita, E. , Yoshikawa, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Bovine heart cytochrome c oxidase modified by dccd
Aoyama, H. , Kurauchi, T. , Mizushima, T. , Muramoto, K. , Shinzawa-Itoh, K. , Tsukihara, T. , Yamashita, E. , Yoshikawa, S.
Primary Citation of Related Structures: 2DYS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Cytochrome c oxidase subunit 1 | A | 514 | Parengyodontium Album | MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK |
| Cytochrome c oxidase subunit 1 | N | 514 | Parengyodontium Album | MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK |
| Cytochrome c oxidase polypeptide VIIa-heart | J | 59 | Parengyodontium Album | FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHKK |
| Cytochrome c oxidase polypeptide VIIa-heart | W | 59 | Parengyodontium Album | FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHKK |
| Cytochrome c oxidase polypeptide VIIb | K | 56 | Parengyodontium Album | IHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWREQ |
| Cytochrome c oxidase polypeptide VIIb | X | 56 | Parengyodontium Album | IHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWREQ |
| Cytochrome c oxidase polypeptide VIIc | L | 47 | Parengyodontium Album | SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK |
| Cytochrome c oxidase polypeptide VIIc | Y | 47 | Parengyodontium Album | SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK |
| Cytochrome c oxidase polypeptide VIII-heart | M | 46 | Parengyodontium Album | ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSSAA |
| Cytochrome c oxidase polypeptide VIII-heart | Z | 46 | Parengyodontium Album | ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSSAA |
| Cytochrome c oxidase subunit 2 | B | 227 | Parengyodontium Album | MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML |
| Cytochrome c oxidase subunit 2 | O | 227 | Parengyodontium Album | MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML |
| Cytochrome c oxidase subunit 3 | C | 261 | Parengyodontium Album | MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS |
| Cytochrome c oxidase subunit 3 | P | 261 | Parengyodontium Album | MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS |
| Cytochrome c oxidase subunit 4 isoform 1 | D | 147 | Parengyodontium Album | AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK |
| Cytochrome c oxidase subunit 4 isoform 1 | Q | 147 | Parengyodontium Album | AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK |
| Cytochrome c oxidase polypeptide Va | E | 109 | Parengyodontium Album | SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
| Cytochrome c oxidase polypeptide Va | R | 109 | Parengyodontium Album | SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
| Cytochrome c oxidase polypeptide Vb | F | 98 | Parengyodontium Album | ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH |
| Cytochrome c oxidase polypeptide Vb | S | 98 | Parengyodontium Album | ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH |
| Cytochrome c oxidase polypeptide VIa-heart | G | 85 | Parengyodontium Album | ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP |
| Cytochrome c oxidase polypeptide VIa-heart | T | 85 | Parengyodontium Album | ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP |
| Cytochrome c oxidase subunit VIb isoform 1 | H | 85 | Parengyodontium Album | AEDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI |
| Cytochrome c oxidase subunit VIb isoform 1 | U | 85 | Parengyodontium Album | AEDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI |
| Cytochrome c oxidase polypeptide VIc | I | 73 | Parengyodontium Album | STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK |
| Cytochrome c oxidase polypeptide VIc | V | 73 | Parengyodontium Album | STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2006-09-16 Deposition Author(s): Aoyama, H. , Kurauchi, T. , Mizushima, T. , Muramoto, K. , Shinzawa-Itoh, K. , Tsukihara, T. , Yamashita, E. , Yoshikawa, S.