2D5V
Crystal structure of hnf-6alpha dna-binding domain in complex with the ttr promoter
PDB DOI: 10.2210/pdb2d5v/pdb
Classification: TRANSCRIPTION/DNA Organism(s): Rattus Norvegicus , Synthetic Construct
Deposited: 2005-11-07 Deposition Author(s): Iyaguchi, D. , Nishihira, J. , Tanaka, I. , Watanabe, N. , Yao, M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2 Å
Crystal structure of hnf-6alpha dna-binding domain in complex with the ttr promoter
Iyaguchi, D. , Nishihira, J. , Tanaka, I. , Watanabe, N. , Yao, M.
Primary Citation of Related Structures: 2D5V
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3' | c | 14 | NA | TCTAAGTCAATAAT |
| 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3' | e | 14 | NA | TCTAAGTCAATAAT |
| 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3' | d | 14 | NA | ATTATTGACTTAGA |
| 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3' | f | 14 | NA | ATTATTGACTTAGA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Hepatocyte nuclear factor 6 | A | 164 | Rattus Norvegicus , Synthetic Construct | MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHHHHHH |
| Hepatocyte nuclear factor 6 | B | 164 | Rattus Norvegicus , Synthetic Construct | MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-11-07 Deposition Author(s): Iyaguchi, D. , Nishihira, J. , Tanaka, I. , Watanabe, N. , Yao, M.