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2BVR

Human thrombin complexed with fragment-based small molecules occupying the s1 pocket

PDB DOI: 10.2210/pdb2bvr/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2005-07-04
Deposition Author(s): Burkert, K. , Deppe, H. , Feurer, A. , Gamer, J. , Junker, H.-D. , Keil, O. , Metz, G. , Neumann, T. , Ottleben, H. , Sekul, R. , Tomandl, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å

2bvr
Literature

Human thrombin complexed with fragment-based small molecules occupying the s1 pocket

Burkert, K. , Deppe, H. , Feurer, A. , Gamer, J. , Junker, H.-D. , Keil, O. , Metz, G. , Neumann, T. , Ottleben, H. , Sekul, R. , Tomandl, D.

Primary Citation of Related Structures: 2BVR


Proteins
Molecule Chains Sequence Length Organism Sequence
ALPHA THROMBIN H 252 Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE
HIRUDIN VARIANT-2 I 11 Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GDFEEIPEEYA
ALPHA THROMBIN L 36 Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2005-07-04
Deposition Author(s): Burkert, K. , Deppe, H. , Feurer, A. , Gamer, J. , Junker, H.-D. , Keil, O. , Metz, G. , Neumann, T. , Ottleben, H. , Sekul, R. , Tomandl, D.