2AK4
Crystal structure of sb27 tcr in complex with hla-b*3508-13mer peptide
PDB DOI: 10.2210/pdb2ak4/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2005-08-03 Deposition Author(s): Beddoe, T. , Borg, N.A. , Buckle, A.M. , Burrows, J.M. , Burrows, S.R. , Clements, C.S. , Kjer-Nielsen, L. , Konstenko, L. , Mccluskey, J. , Miles, J.J. , Purcell, A.W. , Rossjohn, J. , Silins, S.L. , Tynan, F.E. , Whisstock, J.C. , Wilce, M.C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.5 Å
Crystal structure of sb27 tcr in complex with hla-b*3508-13mer peptide
Beddoe, T. , Borg, N.A. , Buckle, A.M. , Burrows, J.M. , Burrows, S.R. , Clements, C.S. , Kjer-Nielsen, L. , Konstenko, L. , Mccluskey, J. , Miles, J.J. , Purcell, A.W. , Rossjohn, J. , Silins, S.L. , Tynan, F.E. , Whisstock, J.C. , Wilce, M.C.
Primary Citation of Related Structures: 2AK4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA-B35 variant | A | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQRRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA-B35 variant | F | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQRRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA-B35 variant | K | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQRRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA-B35 variant | Q | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQRRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| Beta-2-microglobulin | B | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | G | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | L | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | R | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| EBV peptide LPEPLPQGQLTAY | C | 13 | Homo Sapiens , Synthetic Construct | LPEPLPQGQLTAY |
| EBV peptide LPEPLPQGQLTAY | H | 13 | Homo Sapiens , Synthetic Construct | LPEPLPQGQLTAY |
| EBV peptide LPEPLPQGQLTAY | M | 13 | Homo Sapiens , Synthetic Construct | LPEPLPQGQLTAY |
| EBV peptide LPEPLPQGQLTAY | S | 13 | Homo Sapiens , Synthetic Construct | LPEPLPQGQLTAY |
| SB27 T cell receptor alpha chain | D | 211 | Homo Sapiens , Synthetic Construct | HMAQKVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS |
| SB27 T cell receptor alpha chain | I | 211 | Homo Sapiens , Synthetic Construct | HMAQKVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS |
| SB27 T cell receptor alpha chain | N | 211 | Homo Sapiens , Synthetic Construct | HMAQKVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS |
| SB27 T cell receptor alpha chain | T | 211 | Homo Sapiens , Synthetic Construct | HMAQKVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS |
| SB27 T cell receptor beta chain | E | 245 | Homo Sapiens , Synthetic Construct | HMNAGVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVPNGYNVSRLNKREFSLRLESAAPSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
| SB27 T cell receptor beta chain | J | 245 | Homo Sapiens , Synthetic Construct | HMNAGVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVPNGYNVSRLNKREFSLRLESAAPSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
| SB27 T cell receptor beta chain | P | 245 | Homo Sapiens , Synthetic Construct | HMNAGVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVPNGYNVSRLNKREFSLRLESAAPSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
| SB27 T cell receptor beta chain | U | 245 | Homo Sapiens , Synthetic Construct | HMNAGVTQTPKFQVLKTGQSMTLQCAQDMNHNSMYWYRQDPGMGLRLIYYSASEGTTDKGEVPNGYNVSRLNKREFSLRLESAAPSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-08-03 Deposition Author(s): Beddoe, T. , Borg, N.A. , Buckle, A.M. , Burrows, J.M. , Burrows, S.R. , Clements, C.S. , Kjer-Nielsen, L. , Konstenko, L. , Mccluskey, J. , Miles, J.J. , Purcell, A.W. , Rossjohn, J. , Silins, S.L. , Tynan, F.E. , Whisstock, J.C. , Wilce, M.C.