28YE
50s ribosomal subunit with e-trna and rsfs from the alphaproteobacteria asaia platycodi
PDB DOI: 10.2210/pdb28ye/pdb
Classification: RIBOSOME Organism(s): Asaia Platycodi Jcm 25414
Deposited: 2026-02-27 Deposition Author(s): Amikura, K. , Chan, L.I. , Melnikov, S.M. , Omae, K. , Suzuki, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.98 Å
50s ribosomal subunit with e-trna and rsfs from the alphaproteobacteria asaia platycodi
Amikura, K. , Chan, L.I. , Melnikov, S.M. , Omae, K. , Suzuki, S.
Primary Citation of Related Structures: 28YE
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein bL36 | Z | 41 | Asaia Platycodi Jcm 25414 | MKIRNSLKSAKLRDKDCRVVRRRGRVYVINKKNPRMKARQG |
| Large ribosomal subunit protein bL28 | J | 100 | Asaia Platycodi Jcm 25414 | MSRRCQITGKGVLTGNNVSHANNKTRRRFLPNLQEITLLSDILGTGVRLRLSTQGIRTVEHNGGLDSFLITTPNRKLPVEAQVIKRRILRAQESKAAQTA |
| Large ribosomal subunit protein bL27 | K | 88 | Asaia Platycodi Jcm 25414 | MAQKKAGGSSRNGRDSAGRRLGVKKFGGEAVIAGNIIVRQRGTKMMAGSNVGVGRDHTLFALADGAVKFTRRAEGRVHVSVTLAEAAE |
| Large ribosomal subunit protein bL25 | L | 212 | Asaia Platycodi Jcm 25414 | MTNMTSLEVSTRAKAGKGAARATRRAGLVPGVVYGGKQEPALIQIDPRIIHKEMVRGGWRSRLFELPLEGGTVRALLREVQLHPVTDAPIHVDFQRLAAGEKVHVTVSIHVTGEDKAPGIKRGGVLNLVRHTVDVMADVDSIPASFTVDLSALDIHDNVRWDDLTGTENVTPVLQLPNFVIATIAPPTVDAEMEAEAAAKAAAEAAAPAKKK |
| Large ribosomal subunit protein uL24 | M | 106 | Asaia Platycodi Jcm 25414 | MAARIKKGDQVLVLSGSSRGTRGEVLAVLPKVEKAIVRGVAVAKRHQKPTRMNQEGGIIAKEMPVHLSNLKLVDPKSGKPTRVGFRQLEDGRKVRVAKVTGEVIEG |
| Large ribosomal subunit protein uL23 | N | 113 | Asaia Platycodi Jcm 25414 | MTTSIVLARRNKALRMTRESMFDIVRAPLITEKATALSERNQVVFRVAMTAAKPEIKVAVETLFGVKVVSVNTLVQKGKTKMVKGRPGRRSDIKKAYVQLAEGQSIDLTAKLG |
| Large ribosomal subunit protein uL22 | O | 143 | Asaia Platycodi Jcm 25414 | MSKPKHIRTLADTEAQAVARNIRVSPRKLNLVAAMIRNQPADKAIAALTFSRRRIAQEVRKALESAVANAENNHQLDVDQLVVKTAEVGKSIVMKRFHARGRGRSSRIEKFFSHLKIVVAERAAEEAPAPKGKGKDAAEQKAA |
| Large ribosomal subunit protein bL21 | P | 104 | Asaia Platycodi Jcm 25414 | MFAVIRTGGKQYRVTPQITLKVEKLEAEAGTTITFSDVLAVGSDAGIKIGAPLVAGATVTATVIAQDRLDTVIIFKKRRRQNSRRKNGHRQHVTVLRIDAINAA |
| Large ribosomal subunit protein bL20 | Q | 128 | Asaia Platycodi Jcm 25414 | MARVKRGVTTHARHKKVLDLAKGYRGRSSTNYRIALERVEKALRYAYRDRRNKKRDFRALWIQRINAAVREQGLTYSKFINGLAKAGIEIDRKVLAAIAFDDAATFAEIVKLAQMALDLPAEEQTAQA |
| Large ribosomal subunit protein bL17 | S | 141 | Asaia Platycodi Jcm 25414 | MRHGVAGRKLNVTSTHRAAMFRNMAVAIIKHEQITTTLPKAKEIRPVVEKLITLGKRGTLHARRQAFAQLRDETIVTKLFSTIAERYQGRSGGYTRVLKAGVRYGDNADMAVVEMVDRDVDAKGKDSGPVINQSGEEPMAA |
| Large ribosomal subunit protein uL16 | T | 138 | Asaia Platycodi Jcm 25414 | MLSPKRTKFRKAHKGRIHGLAKGGTTLNFGAFGLKALEPERITARQIEASRRAITRAMKRAGRVWIRIFPDLPVSTKPAEVRMGSGKGSPEFWVARVKPGRVLFEIEGVPPEVAREALALGAAKLPIKTKFITRIGEA |
| Large ribosomal subunit protein uL4 | A | 204 | Asaia Platycodi Jcm 25414 | MEYDIKTLDNGSAGTVSLPEELFGATPRADIMARVVHWQLAKRRAGTHRTKGMGEVSGTTKKPFRQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAAGKLIVIDQAAGVTKTREAAAKLAALGWSSALIVDGAVDVAFGRAVRNLPKIDVLPTIGANVYDILNHDVLVLTRAGLEGLKERLA |
| Large ribosomal subunit protein uL15 | U | 161 | Asaia Platycodi Jcm 25414 | MNLNELRDNAGARYRKKRLGRGIGSGKGKTSGRGVKGQKAREGVSLNGFEGGQLPLYRRMPKRGFKNIFRKEFAPVNLGAIDRALADGKLQADATITEETLRAAGLVGTGKYAGIRLLAKGELTRAVTVEVSGASATAIAAVEKAGGSVKVAAKAEAPAEA |
| Large ribosomal subunit protein uL14 | V | 122 | Asaia Platycodi Jcm 25414 | MIHPETNLEVADNSGARQVQCIKVLGGSKRKTASVGDVIVVSVKEAIPRGKVKKGDVHQAVIVRTSYPVRRADGSAIRFDKNAAVLINKSMEPIGTRIFGPVVRELRARKFMKIISLAPEVL |
| Large ribosomal subunit protein uL13 | W | 158 | Asaia Platycodi Jcm 25414 | MKTTLSLKPAEVTKGWTLIDAEGLVLGRLATIIATRLRGKHKPQYTPHVDCGDNIVVINAEKIVLTGNKVGQKLFHYHTGHPGGIKERTITQRLEGKNPGSVIEKAVERMITRGPLQRAQMKHLYVYAGDKHPHEGQQPVKLDVASMNRKNTLNVIEA |
| Large ribosomal subunit protein bL9 | X | 192 | Asaia Platycodi Jcm 25414 | MSQTEVILLQRVEHLGQMGEIVRVKPGYARNFLLPQGKALRANAQNRQRFETERAQLEAQNLKRREEAERLAERMHGLSVVIIRQAGDSGSLYGSVTTRDIALAVTASGLTVGRNQVVLVEPIKMLGLVEARVDLHPEVSIPVTVNVARSEEEAERQARGEAVVAEEDEYVLETEVEGDESAIEGEVEGAAV |
| Large ribosomal subunit protein uL6 | Y | 178 | Asaia Platycodi Jcm 25414 | MSRVGKYPVVIPAGVDISITDGSLTAKGKRGSLTMPLTRFVEAKVEDGKVAILPVGNRSRETWTMWGTTRAIVANLVKGVSEGFSKTLEITGTGFRASVQGSNLVMNLGYSHDVVYPIPADVKITTPRPTAITVEGNDKQRVGQVALDIRNFRKPEPYKGKGVRYETEVLRRKEGKKK |
| Large ribosomal subunit protein bL35 | C | 67 | Asaia Platycodi Jcm 25414 | MPKMKTKSSVKKRFKITATGKVMCGPGNKRHGLINRPQKMKRTNRGPQTMTDMDAKTVKQWAPYGLA |
| Large ribosomal subunit protein bL34 | D | 44 | Asaia Platycodi Jcm 25414 | MKRTYQPSKLVRKRRHGFRARMETVGGRRVINNRRAKGRKKLSA |
| Large ribosomal subunit protein bL19 | R | 127 | Asaia Platycodi Jcm 25414 | MNIVQQYEAREIERLTAARPVPEFQAGDTVRVGVRVVEGTREERVQAYEGVVIARSNKGLNSNFTVRKISNGEGVERIFPLYSPSIAEIAVVRRGKVRRAKLYYLRERSGKSARIAERPRDVAKTAS |
| Ribosome silencing factor S | G | 152 | Asaia Platycodi Jcm 25414 | MKTAGTPRKKAAAAGPRKTRAAAAPRETVGRELVEKALGVITTSLDEDKAEDIVTLDLRGRASFADHMVIATGIADRQIAAMASHVEDKLNEIGIKRITIEGANGTDWVLLDTGDIVVHLFKPESRALYALERMWGKDLDDSAADEADTTDL |
| Large ribosomal subunit protein bL33 | E | 55 | Asaia Platycodi Jcm 25414 | MAKSNVIQIRLVSTAETGYFYVTKKNARSATGKMEVRKYDPVVRKHVAFREAKIK |
| Large ribosomal subunit protein bL32 | F | 67 | Asaia Platycodi Jcm 25414 | MAVPKRKTTPSRMGMRRSHHALTVQAHAECSNCGELKRPHHVCAHCGHYDGREVVASGKTLKTTVRV |
| Large ribosomal subunit protein uL30 | H | 61 | Asaia Platycodi Jcm 25414 | MAENKTVRVKQIASAIGRKPGQADTLVGLGLRGIGSERELEDTPSVRGMIRKVAHLIQVEG |
| Large ribosomal subunit protein uL29 | I | 77 | Asaia Platycodi Jcm 25414 | MADAYKVADLRAKSADELDALLLDLKREQLNLRFQAATGQSEGVGRVRVLRRAIARIKTVAHQSKNKVGAKTSTAES |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA | b | 2726 | NA | GAGAAGGGCAUUCGGUGGAUGCCUUGGCAUCAGGAGGCGACGAAAGACGUGGCACGCUGCGAAAAGCCACGGGGAGCUGCGAGCAAGCUUUGAUCCGUGGAUAUCUGAAUGGGGAAACCCACCUAGCGAUAGGUAUCAUGCCCUGAAUACAUAGGGGUAUGAGGCGAACCCGGGGAACUGAAACAUCUCAGUACCUGGAGGAAAAGACAUCAACAGAGAUUCCGCUAGUAGUGGCGAGCGAACGCGGAACAGGCCAGUGGCCAUUGUGAAAGAAGCAGAACGGUCUGGAAAGUCCGGCGAUAAUGGGUGAUAGCCCCGUAUGCGUAGUGUUCACGAUGGUUCUUGAGUAGGGCGGGGCACGUGAAACCCUGUCUGAACAUGGGGGGACCACCCUCCAAGCCUAAAUACUCCCUGAUGACCGAUAGUGAACAAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGAUGAGGGGAGUGAAAGAGACCUGAAACCGGAUGCCUACAAGCAGUCGGAGCCUCUUAUGGGGUGACGGCGUACCUUUUGUAUAAUGGGUCAGCGAGUUUCUGUUUGCAGCGAGCUUAAGCCGGUAGGUGUAGGCGUAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUUGCUGGCAGAAGACCCGAAACCGAGUGAUCUAGCCAUGGCCAGGCUGAAGGUGCGGUAACACGCACUGGAGGGCCGAACCCACGCCUGUUGAAAAAGUCGGGGAUGAGCUGUGGCUAGGGGUGAAAGGCCAAUCAAACUCGGAGAUAGCUGGUUCUCCGCGAAAUCUAUUGAGGUAGAUCGUCACGUAUUGCCCUCGGGGGUAGAGCACUGGAUGGGCUAGGGGGACCCAAAGUCUUACCAAACCUAACCAAACUCCGAAUACCGAGGAGUAUGAGCGUGGCAGACAGACAGUGGGUGCUAAGGUCCAUUGUCGAGAGGGAAACAGCCCAGACCACCAGCUAAGGCCCCCAAAUCGUGGCUAAGUGGGAAAGGAUGUGGGGAUUCCAAAACAACCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAAAGCGUAAUAGCUCACUGGUCUAAUAGAAACCCUGCGCCGAAAAUGUAACGGGGCUCAAGCCACGUGCCGAAGCUGUGGGUGCAUAUCUUUGAUAUGCGCGGUAGCGGAGCGUUCCGUAGGUCUGCGAAGGAGACGGGGUGACCCUCUCUGGAGAUAUCGGAAGUGCGAAUGCUGACAUGAGUAGCGACAAACAGUGCGAGAAACACUGUCGCCGAAAGUCCAAGGGUUCCUGCGCAAGGUUAAUCCACGCAGGGUGAGCCGGCCCCUAAGGCGAGGGCGAAAGCCGUAGUCGAUGGGAACCAGUUGAAUAUUACUGGGCCUGCCAGAAGUGACGAAUGCAAUAUGUUGUCUGGUCUUAUUGGAUUGACCAGGCUUUUGGAGCAUUCCAGGAAAUAGCUCUGGCGUAUAGACCGUACCCGAAACCGACACAGGUGGACUGGUAGAGAAUACCAAGGCGCUUGAGAGAACGAUGCUGAAGGAACUAGGCAAAUUACUUGUGUAACUUCGGGAUAAGCAAGACCCGUAUGUGGGCAACCAUGUGCGGGUGGCACAGACCAGGGGGUAGCGACUGUUUAGUAAAAACACAGGGCUGUGCGAAGUCGAGAGACGACGUAUACGGCCUGACGCCUGCCCGGUGCCGGAAGGUUAAGAGGAGAUGUGCAAGCAUUGAAUUGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCCCCACUGUCUCCAGCAUCGACUCAGCGAAAUUGAAUUCCCCGUGAAGAUGCGGGGUACCCGCGGUCAGACGGAAAGACCCUAUGAACCUUUACUGCAGCUUUGCAGUGGCAUCAGAGACAUCCUGUGUAGGAUAGGUGGGAGGCUAUGAACCCGAGGCGCCAGCUUCGGUGGAGCCGUCCUUGAAAUACCACCCUGAAUUUUUCUGAUGUCUAACCGAGACCAGUCUAGCCUGGUCCGGGACCCUGCAUGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCCAAAGUGUAACGGAGGCGCGCGAUGGUGGGCUCAGGUCGGUCGGAAACCGACUGUCGAGUGCAAUGGCAUAAGCCCGCCUGACUGUGAGAGUGACAGCUCGAACAGAGACGAAAGUCGGCCAUAGUGAUCCGGUGGUCCCACGUGGACGGGCCAUCGCUCAACGGAUAAAAGGUACUCUAGGGAUAACAGGCUGAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUCGGCUGUUCGCCGAUUAAAGUGGUACGUGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGUGUAUGAGACUUGAGAGGAUUUGUCCCUAGUACGAGAGGACCGGGAUGAACAUACCUCUGGUGUACCGGUUGUCGCGCCAGCGGCACAGCCGGGUAGCUAAGUAUGGACGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCCACCUCAAAACUAGGUCUCACAGGGCCGUGAAAGACCAUCACGUCAAUAGGCCGGGUGUGGAAGCGUGGUAACACGUGAAGCUAACCGGUCCUAAUCGCCCAUAUCGCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-02-27 Deposition Author(s): Amikura, K. , Chan, L.I. , Melnikov, S.M. , Omae, K. , Suzuki, S.