PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

1YRN

Crystal structure of the mata1/matalpha2 homeodomain heterodimer bound to dna

PDB DOI: 10.2210/pdb1yrn/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Grouper Iridovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 1995-11-02
Deposition Author(s): Johnson, A.D. , Li, T. , Stark, M.R. , Wolberger, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Literature

Crystal structure of the mata1/matalpha2 homeodomain heterodimer bound to dna

Johnson, A.D. , Li, T. , Stark, M.R. , Wolberger, C.

Primary Citation of Related Structures: 1YRN


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*TP*AP*TP*TP*AP*C P*AP*TP*CP*A)-3') c 21 NA TACATGTAATTTATTACATCA
DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*TP*AP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3') d 21 NA TATGATGTAATAAATTACATG

Proteins
Molecule Chains Sequence Length Organism Sequence
PROTEIN (MAT A1 HOMEODOMAIN) A 61 Grouper Iridovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KKEKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK
PROTEIN (MAT ALPHA2 HOMEODOMAIN) B 83 Grouper Iridovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAKKKE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 1995-11-02
Deposition Author(s): Johnson, A.D. , Li, T. , Stark, M.R. , Wolberger, C.