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1YFL

T4dam in complex with sinefungin and 16-mer oligonucleotide showing semi-specific and specific contact and flipped base

PDB DOI: 10.2210/pdb1yfl/pdb

Classification: TRANSFERASE/DNA
Organism(s): Enterobacteria Phage T4 , Synthetic Construct

Deposited: 2005-01-03
Deposition Author(s): Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.09 Å

1yfl
Literature

T4dam in complex with sinefungin and 16-mer oligonucleotide showing semi-specific and specific contact and flipped base

Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.

Primary Citation of Related Structures: 1YFL


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' f 16 NA TCACAGGATCCTGTGA
5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' g 16 NA TCACAGGATCCTGTGA
5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' h 16 NA TCACAGGATCCTGTGA
5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' i 16 NA TCACAGGATCCTGTGA

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA adenine methylase A 259 Enterobacteria Phage T4 , Synthetic Construct MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN
DNA adenine methylase B 259 Enterobacteria Phage T4 , Synthetic Construct MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN
DNA adenine methylase D 259 Enterobacteria Phage T4 , Synthetic Construct MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN
DNA adenine methylase E 259 Enterobacteria Phage T4 , Synthetic Construct MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2005-01-03
Deposition Author(s): Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.