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1Y9H

Methylation of cytosine at c5 in a cpg sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-n2-guanine adduct in dna from a minor groove alignment to intercalation with base displacement

PDB DOI: 10.2210/pdb1y9h/pdb

Classification: DNA
Organism(s): N.A.

Deposited: 2004-12-15
Deposition Author(s): Amin, S. , Broyde, S. , Geacintov, N.E. , Hingerty, B.E. , Huang, X. , Kolbanovskiy, A. , Lin, C. , Patel, D.J. , Zhang, N.

Experimental Data Snapshot

Method: SOLUTION NMR
Resolution: N.A.

1y9h
Literature

Methylation of cytosine at c5 in a cpg sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-n2-guanine adduct in dna from a minor groove alignment to intercalation with base displacement

Amin, S. , Broyde, S. , Geacintov, N.E. , Hingerty, B.E. , Huang, X. , Kolbanovskiy, A. , Lin, C. , Patel, D.J. , Zhang, N.

Primary Citation of Related Structures: 1Y9H


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*CP*AP*TP*(5CM)P*(BPG)P*CP*TP*AP*CP*C)-3' a 11 NA CCATCGCTACC
5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3' b 11 NA GGTAGCGATGG
Experimental Data

Method: SOLUTION NMR

Deposited Date: 2004-12-15
Deposition Author(s): Amin, S. , Broyde, S. , Geacintov, N.E. , Hingerty, B.E. , Huang, X. , Kolbanovskiy, A. , Lin, C. , Patel, D.J. , Zhang, N.