1S0M
Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a dna polymerase
PDB DOI: 10.2210/pdb1s0m/pdb
Classification: TRANSFERASE/DNA Organism(s): Sulfolobus Solfataricus , Synthetic Construct
Deposited: 2003-12-31 Deposition Author(s): Boudsocq, F. , Ling, H. , Plosky, B.S. , Sayer, J.M. , Woodgate, R. , Yang, W.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.7 Å
Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a dna polymerase
Boudsocq, F. , Ling, H. , Plosky, B.S. , Sayer, J.M. , Woodgate, R. , Yang, W.
Primary Citation of Related Structures: 1S0M
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3' | c | 13 | NA | GGGGGAAGGATTT |
| 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3' | e | 13 | NA | GGGGGAAGGATTT |
| 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3' | d | 16 | NA | ATAAATCCTTCCCCCA |
| 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3' | f | 16 | NA | ATAAATCCTTCCCCCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase IV | A | 352 | Sulfolobus Solfataricus , Synthetic Construct | MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT |
| DNA polymerase IV | B | 352 | Sulfolobus Solfataricus , Synthetic Construct | MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2003-12-31 Deposition Author(s): Boudsocq, F. , Ling, H. , Plosky, B.S. , Sayer, J.M. , Woodgate, R. , Yang, W.