PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

1NOP

Crystal structure of human tyrosyl-dna phosphodiesterase (tdp1) in complex with vanadate, dna and a human topoisomerase i-derived peptide

PDB DOI: 10.2210/pdb1nop/pdb

Classification: HYDROLASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2003-01-16
Deposition Author(s): Champoux, J.J. , Davies, D.R. , Hol, W.G.J. , Interthal, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

1nop
Literature

Crystal structure of human tyrosyl-dna phosphodiesterase (tdp1) in complex with vanadate, dna and a human topoisomerase i-derived peptide

Champoux, J.J. , Davies, D.R. , Hol, W.G.J. , Interthal, H.

Primary Citation of Related Structures: 1NOP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*GP*AP*GP*TP*T)-3' d 6 NA AGAGTT
5'-D(*AP*GP*AP*GP*TP*T)-3' f 6 NA AGAGTT

Proteins
Molecule Chains Sequence Length Organism Sequence
tyrosyl-DNA phosphodiesterase 1 A 485 Homo Sapiens , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMLEDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS
tyrosyl-DNA phosphodiesterase 1 B 485 Homo Sapiens , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMLEDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS
topoisomerase I-derived peptide C 8 Homo Sapiens , Synthetic Construct KLNYLDPR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2003-01-16
Deposition Author(s): Champoux, J.J. , Davies, D.R. , Hol, W.G.J. , Interthal, H.