PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

1NAK

Igg1 fab fragment (83.1) complex with 16-residue peptide (residues 304-321 of hiv-1 gp120 (mn isolate))

PDB DOI: 10.2210/pdb1nak/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2002-11-27
Deposition Author(s): Ghiara, J.B. , Profy, A.T. , Saphire, E.O. , Stanfield, R.L. , Wilson, I.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.57 Å

1nak
Literature

Igg1 fab fragment (83.1) complex with 16-residue peptide (residues 304-321 of hiv-1 gp120 (mn isolate))

Ghiara, J.B. , Profy, A.T. , Saphire, E.O. , Stanfield, R.L. , Wilson, I.A.

Primary Citation of Related Structures: 1NAK


Proteins
Molecule Chains Sequence Length Organism Sequence
Fab 83.1 - light chain L 219 Mus Musculus , Synthetic Construct DVVMTQSPVSLPVSLGDQASISCRSSQSLGHSSGNTYLHWFLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTFKISRVEAEDLGVYFCFQTTHDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Fab 83.1 - light chain M 219 Mus Musculus , Synthetic Construct DVVMTQSPVSLPVSLGDQASISCRSSQSLGHSSGNTYLHWFLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTFKISRVEAEDLGVYFCFQTTHDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Fab 83.1 - heavy chain H 214 Mus Musculus , Synthetic Construct EVQLQESGPSLVKPSQTLSLTCSVTGVSITSGYWNWIRKFPGNKFEYMGYISKSGSAYYNPSLKSRISFTRDTSKNQFYLKLNSVTTEDTATYYCAIDDFDIWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
Fab 83.1 - heavy chain I 214 Mus Musculus , Synthetic Construct EVQLQESGPSLVKPSQTLSLTCSVTGVSITSGYWNWIRKFPGNKFEYMGYISKSGSAYYNPSLKSRISFTRDTSKNQFYLKLNSVTTEDTATYYCAIDDFDIWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
Peptide MP1 P 16 Mus Musculus , Synthetic Construct CKRIHIGPGRAFYTTC
Peptide MP1 Q 16 Mus Musculus , Synthetic Construct CKRIHIGPGRAFYTTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2002-11-27
Deposition Author(s): Ghiara, J.B. , Profy, A.T. , Saphire, E.O. , Stanfield, R.L. , Wilson, I.A.