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FASTA Sequence PDB Format mmCIF Format
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13BD

Local refinement of the rbd and ntd in the closed ba.3.2.1 spike with n529q mutant

PDB DOI: 10.2210/pdb13bd/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2026-04-27
Deposition Author(s): Hu, Y. , Wang, Y. , Xie, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å

Literature

Local refinement of the rbd and ntd in the closed ba.3.2.1 spike with n529q mutant

Hu, Y. , Wang, Y. , Xie, X.

Primary Citation of Related Structures: 13BD


Proteins
Molecule Chains Sequence Length Organism Sequence
BA.3.2.2 Spike with N529Q mutation C 1271 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLLLVSSQCVNLTTTTQLPLAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNITRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFNNKSWMESESRVYSSAKNCTFEYVFQPFLMDLEGKQGNFTNLREFVFKNIDGYFKIYSKHTPIIVRDLPQGFSALEPLVDLPIGINITRFQTLLHRSYLTSGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESVVRFPNITNLCPFYEVFNATRFPSVYAWNRKRISNCVADYSVLYNFAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVISWNSNRLDSKADGNYNYWYRLFRKSKLKPFERDISTEIYQAGNNPCNGVKGFNCYFPLQSYSFRPTYGVGYQPYRVVVLSFELLHAPATVCGPKQSTNLVKNKCVNFNFNGLTGTGVLTDSNKKFLPFQQFGRDIADTTDAVRDPQTLDILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIRADQLTPTWRVYSTGSKGFQTRAGCLIGAKYVNNSYECDIPIGAGICASYQTQTRSRGSASSVDSQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPITYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICKQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSRDVDLGDISGINASVVNIQKEIERLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
BA.3.2.2 Spike with N529Q mutation A 1271 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLLLVSSQCVNLTTTTQLPLAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNITRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFNNKSWMESESRVYSSAKNCTFEYVFQPFLMDLEGKQGNFTNLREFVFKNIDGYFKIYSKHTPIIVRDLPQGFSALEPLVDLPIGINITRFQTLLHRSYLTSGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESVVRFPNITNLCPFYEVFNATRFPSVYAWNRKRISNCVADYSVLYNFAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVISWNSNRLDSKADGNYNYWYRLFRKSKLKPFERDISTEIYQAGNNPCNGVKGFNCYFPLQSYSFRPTYGVGYQPYRVVVLSFELLHAPATVCGPKQSTNLVKNKCVNFNFNGLTGTGVLTDSNKKFLPFQQFGRDIADTTDAVRDPQTLDILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIRADQLTPTWRVYSTGSKGFQTRAGCLIGAKYVNNSYECDIPIGAGICASYQTQTRSRGSASSVDSQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPITYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICKQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSRDVDLGDISGINASVVNIQKEIERLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2026-04-27
Deposition Author(s): Hu, Y. , Wang, Y. , Xie, X.