11ZW
Structure of the porcine deltacoronavirus (pdcov) receptor-binding domain bound to the rbd minibinder 11, the pd3 fab, and the kappa light chain nanobody
PDB DOI: 10.2210/pdb11zw/pdb
Classification: VIRAL PROTEIN Organism(s): Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct
Deposited: 2026-03-21 Deposition Author(s): Avery, N.G. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Structure of the porcine deltacoronavirus (pdcov) receptor-binding domain bound to the rbd minibinder 11, the pd3 fab, and the kappa light chain nanobody
Avery, N.G. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Primary Citation of Related Structures: 11ZW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PDCoV IL121_2014 receptor binding domain | A | 175 | Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct | MGILPSPGMPALLSLVSLLSVLLMGCVAETGTPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGGGSGLNDIFEAQKIEWHEGGSHHHHHHHH |
| RBD minibinder 11 | B | 176 | Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct | MHHHHHHHHGGSLVPRGSGGSGLNDIFEAQKIEWHEGGSHMLTREEVQAIIDGHVIEVKYDSVEEFLEKYKGKISEETIELIEKLIELTSKDPKLSRLPLIFMQMLDMFIEIMKDLKDRGITSEEDRKLLYDVFKERFEQWFDSFWPGEEEIKEIMLKILDLLYNEDYEKIYEAEK |
| PD3 Fab fragment heavy chain | H | 261 | Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct | MPMGSLQPLATLYLLGMLVASVLAEVQLVESGGGLVQPGGSLRLSCAASGFTFRNYWMNWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSFYLQMNSLRAEDTAVYYCARSSITARALFDCWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCGGSGGSHHHHHHHH |
| PD3 Fab fragment light chain | L | 238 | Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct | MPMGSLQPLATLYLLGMLVASVLADIQLTQSPSFLSASVGDRVTITCRATQDISSYLAWYQQKPGKAPKLLIFTASTLQTGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPWTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Kappa light chain nanobody | N | 159 | Lama Glama , Mus Musculus , Porcine Deltacoronavirus , Synthetic Construct | MKKTAIAIAVALAGFATVAQAAPMGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSSHHHHHHHHEPEA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-03-21 Deposition Author(s): Avery, N.G. , Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.