Search Query :
5NDG
Crystal structure of geneticin (g418) bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Grouper Iridovirus Sequences Data: 5NDG_2 , 5NDG_6 , 5NDG_S8 , 5NDG_S9 , 5NDG_C0 , 5NDG_C1 , 5NDG_C2 , 5NDG_C3 , 5NDG_C4 , 5NDG_C5 , 5NDG_C6 , 5NDG_C7 , 5NDG_S0 , 5NDG_C8 , 5NDG_C9 , 5NDG_D0 , 5NDG_D1 , 5NDG_D2 , 5NDG_D3 , 5NDG_D4 , 5NDG_D5 , 5NDG_D6 , 5NDG_D7 , 5NDG_S1 , 5NDG_D8 , 5NDG_D9 , 5NDG_E0 , 5NDG_E1 , 5NDG_SR , 5NDG_SM , 5NDG_1 , 5NDG_5 , 5NDG_3 , 5NDG_7 , 5NDG_4 , 5NDG_8 , 5NDG_L2 , 5NDG_S2 , 5NDG_L3 , 5NDG_L4 , 5NDG_L5 , 5NDG_L6 , 5NDG_L7 , 5NDG_L8 , 5NDG_L9 , 5NDG_M0 , 5NDG_M1 , 5NDG_M3 , 5NDG_S3 , 5NDG_M4 , 5NDG_M5 , 5NDG_M6 , 5NDG_M7 , 5NDG_M8 , 5NDG_M9 , 5NDG_N0 , 5NDG_N1 , 5NDG_N2 , 5NDG_N3 , 5NDG_S4 , 5NDG_N4 , 5NDG_N5 , 5NDG_N6 , 5NDG_N7 , 5NDG_N8 , 5NDG_N9 , 5NDG_O0 , 5NDG_O1 , 5NDG_O2 , 5NDG_O3 , 5NDG_S5 , 5NDG_O4 , 5NDG_O5 , 5NDG_O6 , 5NDG_O7 , 5NDG_O8 , 5NDG_O9 , 5NDG_Q0 , 5NDG_Q1 , 5NDG_Q2 , 5NDG_Q3 , 5NDG_S6 , 5NDG_P0 , 5NDG_S7
5NDJ
Crystal structure of aminoglycoside tc007 in complex with 70s ribosome from thermus thermophilus, three trnas and mrna (soaking) Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 3.15 Å Organism(s): Adineta Vaga , Haementeria Ghilianii Sequences Data: 5NDJ_13 , 5NDJ_1G , 5NDJ_58 , 5NDJ_15 , 5NDJ_G8 , 5NDJ_C5 , 5NDJ_Q8 , 5NDJ_M5 , 5NDJ_3I , 5NDJ_3A , 5NDJ_3E , 5NDJ_32 , 5NDJ_1H , 5NDJ_14 , 5NDJ_B8 , 5NDJ_75 , 5NDJ_L8 , 5NDJ_H5 , 5NDJ_61 , 5NDJ_69 , 5NDJ_9I , 5NDJ_9A , 5NDJ_A8 , 5NDJ_65 , 5NDJ_1F , 5NDJ_1B , 5NDJ_68 , 5NDJ_25 , 5NDJ_H8 , 5NDJ_D5 , 5NDJ_21 , 5NDJ_29 , 5NDJ_4I , 5NDJ_4A , 5NDJ_4E , 5NDJ_42 , 5NDJ_16 , 5NDJ_1J , 5NDJ_C8 , 5NDJ_85 , 5NDJ_M8 , 5NDJ_I5 , 5NDJ_AI , 5NDJ_AA , 5NDJ_B5 , 5NDJ_F8 , 5NDJ_78 , 5NDJ_35 , 5NDJ_I8 , 5NDJ_E5 , 5NDJ_31 , 5NDJ_39 , 5NDJ_5I , 5NDJ_5A , 5NDJ_5E , 5NDJ_52 , 5NDJ_D8 , 5NDJ_95 , 5NDJ_N8 , 5NDJ_J5 , 5NDJ_BI , 5NDJ_BA , 5NDJ_88 , 5NDJ_45 , 5NDJ_J8 , 5NDJ_F5 , 5NDJ_11 , 5NDJ_19 , 5NDJ_41 , 5NDJ_49 , 5NDJ_6I , 5NDJ_6A , 5NDJ_6E , 5NDJ_62 , 5NDJ_E8 , 5NDJ_A5 , 5NDJ_1E , 5NDJ_12 , 5NDJ_98 , 5NDJ_55 , 5NDJ_K8 , 5NDJ_G5 , 5NDJ_51 , 5NDJ_59 , 5NDJ_1A , 5NDJ_1I , 5NDJ_7I , 5NDJ_7A , 5NDJ_L5 , 5NDJ_P8 , 5NDJ_7E , 5NDJ_72 , 5NDJ_Y1 , 5NDJ_Y4 , 5NDJ_W1 , 5NDJ_X1 , 5NDJ_V1 , 5NDJ_W4 , 5NDJ_X4 , 5NDJ_V4 , 5NDJ_2A , 5NDJ_2I , 5NDJ_8I , 5NDJ_8A , 5NDJ_22 , 5NDJ_2E , 5NDJ_8E , 5NDJ_82
5NDK
Crystal structure of aminoglycoside tc007 co-crystallized with 70s ribosome from thermus thermophilus, three trnas and mrna Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 2.95 Å Organism(s): Adineta Vaga , Haementeria Ghilianii , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) Sequences Data: 5NDK_13 , 5NDK_1G , 5NDK_58 , 5NDK_15 , 5NDK_G8 , 5NDK_C5 , 5NDK_Q8 , 5NDK_M5 , 5NDK_3I , 5NDK_3A , 5NDK_3E , 5NDK_32 , 5NDK_1H , 5NDK_14 , 5NDK_B8 , 5NDK_75 , 5NDK_L8 , 5NDK_H5 , 5NDK_61 , 5NDK_69 , 5NDK_9I , 5NDK_9A , 5NDK_A8 , 5NDK_65 , 5NDK_1F , 5NDK_1B , 5NDK_68 , 5NDK_25 , 5NDK_H8 , 5NDK_D5 , 5NDK_21 , 5NDK_29 , 5NDK_4I , 5NDK_4A , 5NDK_4E , 5NDK_42 , 5NDK_16 , 5NDK_1J , 5NDK_C8 , 5NDK_85 , 5NDK_M8 , 5NDK_I5 , 5NDK_AI , 5NDK_AA , 5NDK_B5 , 5NDK_F8 , 5NDK_78 , 5NDK_35 , 5NDK_I8 , 5NDK_E5 , 5NDK_31 , 5NDK_39 , 5NDK_5I , 5NDK_5A , 5NDK_5E , 5NDK_52 , 5NDK_D8 , 5NDK_95 , 5NDK_N8 , 5NDK_J5 , 5NDK_BI , 5NDK_BA , 5NDK_88 , 5NDK_45 , 5NDK_J8 , 5NDK_F5 , 5NDK_11 , 5NDK_19 , 5NDK_41 , 5NDK_49 , 5NDK_6I , 5NDK_6A , 5NDK_6E , 5NDK_62 , 5NDK_E8 , 5NDK_A5 , 5NDK_1E , 5NDK_12 , 5NDK_98 , 5NDK_55 , 5NDK_K8 , 5NDK_G5 , 5NDK_51 , 5NDK_59 , 5NDK_1A , 5NDK_1I , 5NDK_7I , 5NDK_7A , 5NDK_L5 , 5NDK_P8 , 5NDK_7E , 5NDK_72 , 5NDK_Y1 , 5NDK_Y4 , 5NDK_W1 , 5NDK_X1 , 5NDK_V1 , 5NDK_W4 , 5NDK_X4 , 5NDK_V4 , 5NDK_2A , 5NDK_2I , 5NDK_8I , 5NDK_8A , 5NDK_22 , 5NDK_2E , 5NDK_8E , 5NDK_82
5NDV
Crystal structure of paromomycin bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-09 Method: X-RAY DIFFRACTION Resolution: 3.3 Å Organism(s): Grouper Iridovirus , Pseudomonas Chlororaphis Subsp. Piscium , Bacillus Paralicheniformis Atcc 9945A Sequences Data: 5NDV_1 , 5NDV_5 , 5NDV_L8 , 5NDV_L9 , 5NDV_M0 , 5NDV_M1 , 5NDV_M3 , 5NDV_M4 , 5NDV_M5 , 5NDV_M6 , 5NDV_M7 , 5NDV_M8 , 5NDV_3 , 5NDV_7 , 5NDV_M9 , 5NDV_N0 , 5NDV_N1 , 5NDV_N2 , 5NDV_N3 , 5NDV_N4 , 5NDV_N5 , 5NDV_N6 , 5NDV_N7 , 5NDV_N8 , 5NDV_4 , 5NDV_8 , 5NDV_N9 , 5NDV_O0 , 5NDV_O1 , 5NDV_O2 , 5NDV_O3 , 5NDV_O4 , 5NDV_O5 , 5NDV_O6 , 5NDV_O7 , 5NDV_O8 , 5NDV_L2 , 5NDV_O9 , 5NDV_Q0 , 5NDV_Q1 , 5NDV_Q2 , 5NDV_Q3 , 5NDV_2 , 5NDV_6 , 5NDV_S0 , 5NDV_S1 , 5NDV_S2 , 5NDV_S3 , 5NDV_L3 , 5NDV_S4 , 5NDV_S5 , 5NDV_S6 , 5NDV_S7 , 5NDV_S8 , 5NDV_S9 , 5NDV_C0 , 5NDV_C1 , 5NDV_C2 , 5NDV_C3 , 5NDV_L4 , 5NDV_C4 , 5NDV_C5 , 5NDV_C6 , 5NDV_C7 , 5NDV_C8 , 5NDV_C9 , 5NDV_D0 , 5NDV_D1 , 5NDV_D2 , 5NDV_D3 , 5NDV_L5 , 5NDV_D4 , 5NDV_D5 , 5NDV_D6 , 5NDV_D7 , 5NDV_D8 , 5NDV_D9 , 5NDV_E0 , 5NDV_SR , 5NDV_SM , 5NDV_L6 , 5NDV_L7
5NDW
Crystal structure of aminoglycoside tc007 bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-09 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Grouper Iridovirus , Pseudomonas Chlororaphis Subsp. Piscium , Burkholderia Vietnamiensis (Strain G4 / Lmg 22486) Sequences Data: 5NDW_1 , 5NDW_5 , 5NDW_C5 , 5NDW_C6 , 5NDW_C7 , 5NDW_C8 , 5NDW_C9 , 5NDW_D0 , 5NDW_D1 , 5NDW_D2 , 5NDW_D3 , 5NDW_D4 , 5NDW_2 , 5NDW_6 , 5NDW_D5 , 5NDW_D6 , 5NDW_D7 , 5NDW_D8 , 5NDW_D9 , 5NDW_E0 , 5NDW_E1 , 5NDW_L2 , 5NDW_L3 , 5NDW_L4 , 5NDW_3 , 5NDW_7 , 5NDW_L5 , 5NDW_L6 , 5NDW_L7 , 5NDW_L8 , 5NDW_L9 , 5NDW_M0 , 5NDW_M1 , 5NDW_M3 , 5NDW_M4 , 5NDW_M5 , 5NDW_4 , 5NDW_8 , 5NDW_M6 , 5NDW_M7 , 5NDW_M8 , 5NDW_M9 , 5NDW_N0 , 5NDW_N1 , 5NDW_N2 , 5NDW_N3 , 5NDW_N4 , 5NDW_N5 , 5NDW_C0 , 5NDW_N6 , 5NDW_N7 , 5NDW_N8 , 5NDW_N9 , 5NDW_O0 , 5NDW_O1 , 5NDW_O2 , 5NDW_O3 , 5NDW_O4 , 5NDW_O5 , 5NDW_C1 , 5NDW_O6 , 5NDW_O7 , 5NDW_O8 , 5NDW_O9 , 5NDW_Q0 , 5NDW_Q1 , 5NDW_Q2 , 5NDW_Q3 , 5NDW_S0 , 5NDW_S1 , 5NDW_C2 , 5NDW_S2 , 5NDW_S3 , 5NDW_S4 , 5NDW_S5 , 5NDW_S6 , 5NDW_S7 , 5NDW_S8 , 5NDW_S9 , 5NDW_SM , 5NDW_SR , 5NDW_C3 , 5NDW_C4
5OBM
Crystal structure of gentamicin bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-06-28 Method: X-RAY DIFFRACTION Resolution: 3.4 Å Organism(s): Pseudomonas Chlororaphis Subsp. Piscium Sequences Data: 5OBM_1 , 5OBM_5 , 5OBM_L8 , 5OBM_L9 , 5OBM_M0 , 5OBM_M1 , 5OBM_M3 , 5OBM_M4 , 5OBM_M5 , 5OBM_M6 , 5OBM_M7 , 5OBM_M8 , 5OBM_3 , 5OBM_7 , 5OBM_M9 , 5OBM_N0 , 5OBM_N1 , 5OBM_N2 , 5OBM_N3 , 5OBM_N4 , 5OBM_N5 , 5OBM_N6 , 5OBM_N7 , 5OBM_N8 , 5OBM_4 , 5OBM_8 , 5OBM_N9 , 5OBM_O0 , 5OBM_O1 , 5OBM_O2 , 5OBM_O3 , 5OBM_O4 , 5OBM_O5 , 5OBM_O6 , 5OBM_O7 , 5OBM_O8 , 5OBM_L2 , 5OBM_O9 , 5OBM_Q0 , 5OBM_Q1 , 5OBM_Q2 , 5OBM_Q3 , 5OBM_2 , 5OBM_6 , 5OBM_S0 , 5OBM_S1 , 5OBM_S2 , 5OBM_S3 , 5OBM_L3 , 5OBM_S4 , 5OBM_S5 , 5OBM_S6 , 5OBM_S7 , 5OBM_S8 , 5OBM_S9 , 5OBM_C0 , 5OBM_C1 , 5OBM_C2 , 5OBM_C3 , 5OBM_L4 , 5OBM_C4 , 5OBM_C5 , 5OBM_C6 , 5OBM_C7 , 5OBM_C8 , 5OBM_C9 , 5OBM_D0 , 5OBM_D1 , 5OBM_D2 , 5OBM_D3 , 5OBM_L5 , 5OBM_D4 , 5OBM_D5 , 5OBM_D6 , 5OBM_D7 , 5OBM_D8 , 5OBM_D9 , 5OBM_E0 , 5OBM_E1 , 5OBM_SR , 5OBM_SM , 5OBM_L6 , 5OBM_M2 , 5OBM_P0 , 5OBM_P1 , 5OBM_L7
7OSA
Pre-translocation complex of 80 s.cerevisiae ribosome with eef2 and ligands Deposition Author(s): Demeshkina, N. , Djumagulov, M. , Jenner, L. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2021-06-08 Method: X-RAY DIFFRACTION Resolution: 3 Å Organism(s): Adineta Vaga , Grouper Iridovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) Sequences Data: 7OSA_25S , 7OSA_UL30 , 7OSA_EL8 , 7OSA_UL6 , 7OSA_UL16 , 7OSA_UL5 , 7OSA_EL13 , 7OSA_EL14 , 7OSA_EL15 , 7OSA_UL13 , 7OSA_UL22 , 7OSA_AB , 7OSA_EL18 , 7OSA_EL19 , 7OSA_EL20 , 7OSA_EL21 , 7OSA_EL22 , 7OSA_UL14 , 7OSA_EL24 , 7OSA_UL23 , 7OSA_UL24 , 7OSA_EL27 , 7OSA_58S , 7OSA_UL15 , 7OSA_EL29 , 7OSA_EL30 , 7OSA_EL31 , 7OSA_EL32 , 7OSA_EL33 , 7OSA_EL34 , 7OSA_UL29 , 7OSA_EL36 , 7OSA_EL37 , 7OSA_UL10 , 7OSA_EL38 , 7OSA_EL39 , 7OSA_EL40 , 7OSA_EL41 , 7OSA_EL42 , 7OSA_EL43 , 7OSA_18S , 7OSA_US2 , 7OSA_ES1 , 7OSA_US5 , 7OSA_UL2 , 7OSA_US3 , 7OSA_ES4 , 7OSA_US7 , 7OSA_ES6 , 7OSA_ES7 , 7OSA_ES8 , 7OSA_US4 , 7OSA_ES10 , 7OSA_US17 , 7OSA_ES12 , 7OSA_UL3 , 7OSA_US15 , 7OSA_US11 , 7OSA_US19 , 7OSA_US9 , 7OSA_ES17 , 7OSA_US13 , 7OSA_ES19 , 7OSA_US10 , 7OSA_ES21 , 7OSA_US8 , 7OSA_UL4 , 7OSA_US12 , 7OSA_ES24 , 7OSA_ES25 , 7OSA_ES26 , 7OSA_ES27 , 7OSA_ES28 , 7OSA_US14 , 7OSA_ES30 , 7OSA_RACK , 7OSA_ES31 , 7OSA_UL18 , 7OSA_EEF2 , 7OSA_PSIT , 7OSA_MRNA , 7OSA_UL11 , 7OSA_EL6
7OSM
Intermediate translocation complex of 80 s.cerevisiae ribosome with eef2 and ligands Deposition Author(s): Demeshkina, N. , Djumagulov, M. , Jenner, L. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2021-06-09 Method: X-RAY DIFFRACTION Resolution: 3 Å Organism(s): Adineta Vaga , Grouper Iridovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) Sequences Data: 7OSM_25S , 7OSM_UL30 , 7OSM_EL8 , 7OSM_UL6 , 7OSM_UL16 , 7OSM_UL5 , 7OSM_EL13 , 7OSM_EL14 , 7OSM_EL15 , 7OSM_UL13 , 7OSM_UL22 , 7OSM_AB , 7OSM_EL18 , 7OSM_EL19 , 7OSM_EL20 , 7OSM_EL21 , 7OSM_EL22 , 7OSM_UL14 , 7OSM_EL24 , 7OSM_UL23 , 7OSM_UL24 , 7OSM_EL27 , 7OSM_58S , 7OSM_UL15 , 7OSM_EL29 , 7OSM_EL30 , 7OSM_EL31 , 7OSM_EL32 , 7OSM_EL33 , 7OSM_EL34 , 7OSM_UL29 , 7OSM_EL36 , 7OSM_EL37 , 7OSM_UL10 , 7OSM_EL38 , 7OSM_EL39 , 7OSM_EL40 , 7OSM_EL41 , 7OSM_EL42 , 7OSM_EL43 , 7OSM_18S , 7OSM_US2 , 7OSM_ES1 , 7OSM_US5 , 7OSM_UL2 , 7OSM_US3 , 7OSM_ES4 , 7OSM_US7 , 7OSM_ES6 , 7OSM_ES7 , 7OSM_ES8 , 7OSM_US4 , 7OSM_ES10 , 7OSM_US17 , 7OSM_US15 , 7OSM_UL3 , 7OSM_US11 , 7OSM_US19 , 7OSM_US9 , 7OSM_ES17 , 7OSM_US13 , 7OSM_ES19 , 7OSM_US10 , 7OSM_ES21 , 7OSM_US8 , 7OSM_US12 , 7OSM_UL4 , 7OSM_ES24 , 7OSM_ES25 , 7OSM_ES26 , 7OSM_ES27 , 7OSM_ES28 , 7OSM_US14 , 7OSM_ES30 , 7OSM_RACK , 7OSM_ES31 , 7OSM_EEF2 , 7OSM_UL18 , 7OSM_ASIT , 7OSM_PSIT , 7OSM_MRNA , 7OSM_UL11 , 7OSM_EL6