Search Query :
5IBB
Structure of t. thermophilus 70s ribosome complex with mrna, trnafmet and cognate trnaval in the a-site Deposition Author(s): Demeshkina, N. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2016-02-22 Method: X-RAY DIFFRACTION Resolution: 2.96 Å Organism(s): Escherichia Coli K-12 , Thermus Thermophilus Hb8 , Synthetic Construct Sequences Data: 5IBB_13 , 5IBB_1G , 5IBB_1I , 5IBB_1A , 5IBB_2I , 5IBB_2A , 5IBB_3I , 5IBB_3A , 5IBB_4I , 5IBB_4A , 5IBB_5I , 5IBB_5A , 5IBB_6I , 5IBB_6A , 5IBB_7I , 5IBB_7A , 5IBB_8I , 5IBB_8A , 5IBB_9I , 5IBB_9A , 5IBB_AI , 5IBB_AA , 5IBB_1E , 5IBB_12 , 5IBB_BI , 5IBB_BA , 5IBB_1F , 5IBB_1B , 5IBB_1K , 5IBB_2K , 5IBB_2L , 5IBB_3K , 5IBB_3L , 5IBB_4K , 5IBB_4L , 5IBB_1H , 5IBB_14 , 5IBB_16 , 5IBB_1J , 5IBB_71 , 5IBB_79 , 5IBB_11 , 5IBB_19 , 5IBB_2E , 5IBB_22 , 5IBB_21 , 5IBB_29 , 5IBB_31 , 5IBB_39 , 5IBB_41 , 5IBB_49 , 5IBB_51 , 5IBB_59 , 5IBB_61 , 5IBB_69 , 5IBB_58 , 5IBB_15 , 5IBB_68 , 5IBB_25 , 5IBB_78 , 5IBB_35 , 5IBB_88 , 5IBB_45 , 5IBB_98 , 5IBB_55 , 5IBB_3E , 5IBB_32 , 5IBB_A8 , 5IBB_65 , 5IBB_B8 , 5IBB_75 , 5IBB_C8 , 5IBB_85 , 5IBB_D8 , 5IBB_95 , 5IBB_E8 , 5IBB_A5 , 5IBB_F8 , 5IBB_B5 , 5IBB_G8 , 5IBB_C5 , 5IBB_H8 , 5IBB_D5 , 5IBB_I8 , 5IBB_E5 , 5IBB_J8 , 5IBB_F5 , 5IBB_4E , 5IBB_42 , 5IBB_K8 , 5IBB_G5 , 5IBB_L8 , 5IBB_H5 , 5IBB_M8 , 5IBB_I5 , 5IBB_N8 , 5IBB_J5 , 5IBB_P8 , 5IBB_L5 , 5IBB_Q8 , 5IBB_M5 , 5IBB_1L , 5IBB_5E , 5IBB_52 , 5IBB_6E , 5IBB_62 , 5IBB_7E , 5IBB_72 , 5IBB_8E , 5IBB_82
5LI0
70s ribosome from staphylococcus aureus Deposition Author(s): Bochler, A. , Chicher, J. , Grosse, F. , Hashem, Y. , Khusainov, I. , Marzi, S. , Menetret, J.F. , Myasnikov, A. , Romby, P. , Vicens, Q. , Yusupov, M. , Yusupova, G.
Date: 2016-07-13 Method: ELECTRON MICROSCOPY Resolution: 3.8 Å Organism(s): Staphylococcus Aureus (Strain Nctc 8325) Sequences Data: 5LI0_A , 5LI0_J , 5LI0_K , 5LI0_L , 5LI0_M , 5LI0_N , 5LI0_O , 5LI0_P , 5LI0_Q , 5LI0_R , 5LI0_S , 5LI0_B , 5LI0_T , 5LI0_D , 5LI0_E , 5LI0_F , 5LI0_G , 5LI0_H , 5LI0_C , 5LI0_U , 5LI0_V , 5LI0_W , 5LI0_X , 5LI0_Y , 5LI0_Z , 5LI0_0 , 5LI0_1 , 5LI0_2 , 5LI0_3 , 5LI0_4 , 5LI0_5 , 5LI0_6 , 5LI0_7 , 5LI0_8 , 5LI0_I
5MEI
Crystal structure of agelastatin a bound to the 80s ribosome Deposition Author(s): Dang, Y. , Green, R. , Jouanneau, M. , Liu, J.O. , Lu, J. , Luo, C. , Mcclary, B. , Meyer, M. , Pellegrino, S. , Reyes, J.C.P. , Romo, D. , Schuller, A. , Yusupov, M. , Yusupova, G. , Zinshteyn, B.
Date: 2016-11-15 Method: X-RAY DIFFRACTION Resolution: 3.5 Å Organism(s): Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) Sequences Data: 5MEI_1 , 5MEI_AR , 5MEI_P , 5MEI_CJ , 5MEI_Q , 5MEI_CK , 5MEI_R , 5MEI_CL , 5MEI_S , 5MEI_CM , 5MEI_T , 5MEI_CN , 5MEI_U , 5MEI_CO , 5MEI_V , 5MEI_CP , 5MEI_W , 5MEI_CQ , 5MEI_X , 5MEI_CR , 5MEI_Y , 5MEI_CS , 5MEI_3 , 5MEI_AS , 5MEI_Z , 5MEI_CT , 5MEI_0 , 5MEI_CU , 5MEI_2 , 5MEI_CV , 5MEI_5 , 5MEI_CW , 5MEI_L2 , 5MEI_CX , 5MEI_6 , 5MEI_A , 5MEI_7 , 5MEI_CY , 5MEI_8 , 5MEI_CZ , 5MEI_9 , 5MEI_DA , 5MEI_AA , 5MEI_DB , 5MEI_4 , 5MEI_AT , 5MEI_AB , 5MEI_DC , 5MEI_AC , 5MEI_DD , 5MEI_AD , 5MEI_DE , 5MEI_AE , 5MEI_DF , 5MEI_AF , 5MEI_DG , 5MEI_AG , 5MEI_DH , 5MEI_AH , 5MEI_DI , 5MEI_AI , 5MEI_DJ , 5MEI_AJ , 5MEI_DK , 5MEI_AK , 5MEI_DL , 5MEI_J , 5MEI_CD , 5MEI_AL , 5MEI_DM , 5MEI_AM , 5MEI_DN , 5MEI_AN , 5MEI_DO , 5MEI_AO , 5MEI_DP , 5MEI_AP , 5MEI_DQ , 5MEI_AQ , 5MEI_DR , 5MEI_I , 5MEI_P0 , 5MEI_SM , 5MEI_B , 5MEI_S0 , 5MEI_K , 5MEI_CE , 5MEI_C , 5MEI_S1 , 5MEI_D , 5MEI_S2 , 5MEI_E , 5MEI_S3 , 5MEI_F , 5MEI_S4 , 5MEI_G , 5MEI_S5 , 5MEI_H , 5MEI_S6 , 5MEI_S7 , 5MEI_S8 , 5MEI_S9 , 5MEI_L , 5MEI_C0 , 5MEI_CF , 5MEI_M , 5MEI_C1 , 5MEI_N , 5MEI_C2 , 5MEI_O , 5MEI_C3 , 5MEI_C4 , 5MEI_C5 , 5MEI_C6 , 5MEI_C8 , 5MEI_C9 , 5MEI_D0 , 5MEI_CG , 5MEI_D1 , 5MEI_D2 , 5MEI_D3 , 5MEI_D4 , 5MEI_D5 , 5MEI_D6 , 5MEI_D7 , 5MEI_D8 , 5MEI_D9 , 5MEI_E0 , 5MEI_CH , 5MEI_SR , 5MEI_C7 , 5MEI_E1 , 5MEI_CI
5ND8
Hibernating ribosome from staphylococcus aureus (unrotated state) Deposition Author(s): Ayupov, R. , Hashem, Y. , Khusainov, I. , Kieffer, B. , Myasnikov, A. , Simonetti, A. , Usachev, K. , Validov, S. , Vicens, Q. , Yusupov, M. , Yusupova, G.
Date: 2017-03-07 Method: ELECTRON MICROSCOPY Resolution: 3.7 Å Organism(s): Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 Sequences Data: 5ND8_A , 5ND8_J , 5ND8_K , 5ND8_L , 5ND8_M , 5ND8_N , 5ND8_O , 5ND8_P , 5ND8_Q , 5ND8_R , 5ND8_S , 5ND8_B , 5ND8_T , 5ND8_U , 5ND8_V , 5ND8_D , 5ND8_E , 5ND8_F , 5ND8_G , 5ND8_H , 5ND8_C , 5ND8_W , 5ND8_X , 5ND8_Y , 5ND8_Z , 5ND8_0 , 5ND8_1 , 5ND8_2 , 5ND8_3 , 5ND8_4 , 5ND8_5 , 5ND8_6 , 5ND8_7 , 5ND8_8 , 5ND8_I
5ND9
Hibernating ribosome from staphylococcus aureus (rotated state) Deposition Author(s): Ayupov, R. , Hashem, Y. , Khusainov, I. , Kieffer, B. , Myasnikov, A. , Simonetti, A. , Usachev, K. , Validov, S. , Vicens, Q. , Yusupov, M. , Yusupova, G.
Date: 2017-03-07 Method: ELECTRON MICROSCOPY Resolution: 3.7 Å Organism(s): Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 Sequences Data: 5ND9_A , 5ND9_J , 5ND9_K , 5ND9_L , 5ND9_M , 5ND9_N , 5ND9_O , 5ND9_P , 5ND9_Q , 5ND9_R , 5ND9_S , 5ND9_B , 5ND9_T , 5ND9_U , 5ND9_V , 5ND9_D , 5ND9_E , 5ND9_F , 5ND9_G , 5ND9_H , 5ND9_C , 5ND9_W , 5ND9_X , 5ND9_Y , 5ND9_Z , 5ND9_0 , 5ND9_1 , 5ND9_2 , 5ND9_3 , 5ND9_4 , 5ND9_5 , 5ND9_6 , 5ND9_7 , 5ND9_8 , 5ND9_I
5NDG
Crystal structure of geneticin (g418) bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Saccharomyces Cerevisiae Sequences Data: 5NDG_2 , 5NDG_6 , 5NDG_S8 , 5NDG_S9 , 5NDG_C0 , 5NDG_C1 , 5NDG_C2 , 5NDG_C3 , 5NDG_C4 , 5NDG_C5 , 5NDG_C6 , 5NDG_C7 , 5NDG_S0 , 5NDG_C8 , 5NDG_C9 , 5NDG_D0 , 5NDG_D1 , 5NDG_D2 , 5NDG_D3 , 5NDG_D4 , 5NDG_D5 , 5NDG_D6 , 5NDG_D7 , 5NDG_S1 , 5NDG_D8 , 5NDG_D9 , 5NDG_E0 , 5NDG_E1 , 5NDG_SR , 5NDG_SM , 5NDG_1 , 5NDG_5 , 5NDG_3 , 5NDG_7 , 5NDG_4 , 5NDG_8 , 5NDG_L2 , 5NDG_S2 , 5NDG_L3 , 5NDG_L4 , 5NDG_L5 , 5NDG_L6 , 5NDG_L7 , 5NDG_L8 , 5NDG_L9 , 5NDG_M0 , 5NDG_M1 , 5NDG_M3 , 5NDG_S3 , 5NDG_M4 , 5NDG_M5 , 5NDG_M6 , 5NDG_M7 , 5NDG_M8 , 5NDG_M9 , 5NDG_N0 , 5NDG_N1 , 5NDG_N2 , 5NDG_N3 , 5NDG_S4 , 5NDG_N4 , 5NDG_N5 , 5NDG_N6 , 5NDG_N7 , 5NDG_N8 , 5NDG_N9 , 5NDG_O0 , 5NDG_O1 , 5NDG_O2 , 5NDG_O3 , 5NDG_S5 , 5NDG_O4 , 5NDG_O5 , 5NDG_O6 , 5NDG_O7 , 5NDG_O8 , 5NDG_O9 , 5NDG_Q0 , 5NDG_Q1 , 5NDG_Q2 , 5NDG_Q3 , 5NDG_S6 , 5NDG_P0 , 5NDG_S7
5NDJ
Crystal structure of aminoglycoside tc007 in complex with 70s ribosome from thermus thermophilus, three trnas and mrna (soaking) Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 3.15 Å Organism(s): Escherichia Coli , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) Sequences Data: 5NDJ_13 , 5NDJ_1G , 5NDJ_58 , 5NDJ_15 , 5NDJ_G8 , 5NDJ_C5 , 5NDJ_Q8 , 5NDJ_M5 , 5NDJ_3I , 5NDJ_3A , 5NDJ_3E , 5NDJ_32 , 5NDJ_1H , 5NDJ_14 , 5NDJ_B8 , 5NDJ_75 , 5NDJ_L8 , 5NDJ_H5 , 5NDJ_61 , 5NDJ_69 , 5NDJ_9I , 5NDJ_9A , 5NDJ_A8 , 5NDJ_65 , 5NDJ_1F , 5NDJ_1B , 5NDJ_68 , 5NDJ_25 , 5NDJ_H8 , 5NDJ_D5 , 5NDJ_21 , 5NDJ_29 , 5NDJ_4I , 5NDJ_4A , 5NDJ_4E , 5NDJ_42 , 5NDJ_16 , 5NDJ_1J , 5NDJ_C8 , 5NDJ_85 , 5NDJ_M8 , 5NDJ_I5 , 5NDJ_AI , 5NDJ_AA , 5NDJ_B5 , 5NDJ_F8 , 5NDJ_78 , 5NDJ_35 , 5NDJ_I8 , 5NDJ_E5 , 5NDJ_31 , 5NDJ_39 , 5NDJ_5I , 5NDJ_5A , 5NDJ_5E , 5NDJ_52 , 5NDJ_D8 , 5NDJ_95 , 5NDJ_N8 , 5NDJ_J5 , 5NDJ_BI , 5NDJ_BA , 5NDJ_88 , 5NDJ_45 , 5NDJ_J8 , 5NDJ_F5 , 5NDJ_11 , 5NDJ_19 , 5NDJ_41 , 5NDJ_49 , 5NDJ_6I , 5NDJ_6A , 5NDJ_6E , 5NDJ_62 , 5NDJ_E8 , 5NDJ_A5 , 5NDJ_1E , 5NDJ_12 , 5NDJ_98 , 5NDJ_55 , 5NDJ_K8 , 5NDJ_G5 , 5NDJ_51 , 5NDJ_59 , 5NDJ_1A , 5NDJ_1I , 5NDJ_7I , 5NDJ_7A , 5NDJ_L5 , 5NDJ_P8 , 5NDJ_7E , 5NDJ_72 , 5NDJ_Y1 , 5NDJ_Y4 , 5NDJ_W1 , 5NDJ_X1 , 5NDJ_V1 , 5NDJ_W4 , 5NDJ_X4 , 5NDJ_V4 , 5NDJ_2A , 5NDJ_2I , 5NDJ_8I , 5NDJ_8A , 5NDJ_22 , 5NDJ_2E , 5NDJ_8E , 5NDJ_82
5NDK
Crystal structure of aminoglycoside tc007 co-crystallized with 70s ribosome from thermus thermophilus, three trnas and mrna Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-08 Method: X-RAY DIFFRACTION Resolution: 2.95 Å Organism(s): Escherichia Coli , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct Sequences Data: 5NDK_13 , 5NDK_1G , 5NDK_58 , 5NDK_15 , 5NDK_G8 , 5NDK_C5 , 5NDK_Q8 , 5NDK_M5 , 5NDK_3I , 5NDK_3A , 5NDK_3E , 5NDK_32 , 5NDK_1H , 5NDK_14 , 5NDK_B8 , 5NDK_75 , 5NDK_L8 , 5NDK_H5 , 5NDK_61 , 5NDK_69 , 5NDK_9I , 5NDK_9A , 5NDK_A8 , 5NDK_65 , 5NDK_1F , 5NDK_1B , 5NDK_68 , 5NDK_25 , 5NDK_H8 , 5NDK_D5 , 5NDK_21 , 5NDK_29 , 5NDK_4I , 5NDK_4A , 5NDK_4E , 5NDK_42 , 5NDK_16 , 5NDK_1J , 5NDK_C8 , 5NDK_85 , 5NDK_M8 , 5NDK_I5 , 5NDK_AI , 5NDK_AA , 5NDK_B5 , 5NDK_F8 , 5NDK_78 , 5NDK_35 , 5NDK_I8 , 5NDK_E5 , 5NDK_31 , 5NDK_39 , 5NDK_5I , 5NDK_5A , 5NDK_5E , 5NDK_52 , 5NDK_D8 , 5NDK_95 , 5NDK_N8 , 5NDK_J5 , 5NDK_BI , 5NDK_BA , 5NDK_88 , 5NDK_45 , 5NDK_J8 , 5NDK_F5 , 5NDK_11 , 5NDK_19 , 5NDK_41 , 5NDK_49 , 5NDK_6I , 5NDK_6A , 5NDK_6E , 5NDK_62 , 5NDK_E8 , 5NDK_A5 , 5NDK_1E , 5NDK_12 , 5NDK_98 , 5NDK_55 , 5NDK_K8 , 5NDK_G5 , 5NDK_51 , 5NDK_59 , 5NDK_1A , 5NDK_1I , 5NDK_7I , 5NDK_7A , 5NDK_L5 , 5NDK_P8 , 5NDK_7E , 5NDK_72 , 5NDK_Y1 , 5NDK_Y4 , 5NDK_W1 , 5NDK_X1 , 5NDK_V1 , 5NDK_W4 , 5NDK_X4 , 5NDK_V4 , 5NDK_2A , 5NDK_2I , 5NDK_8I , 5NDK_8A , 5NDK_22 , 5NDK_2E , 5NDK_8E , 5NDK_82
5NDV
Crystal structure of paromomycin bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-09 Method: X-RAY DIFFRACTION Resolution: 3.3 Å Organism(s): Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae (Strain Rm11-1A) Sequences Data: 5NDV_1 , 5NDV_5 , 5NDV_L8 , 5NDV_L9 , 5NDV_M0 , 5NDV_M1 , 5NDV_M3 , 5NDV_M4 , 5NDV_M5 , 5NDV_M6 , 5NDV_M7 , 5NDV_M8 , 5NDV_3 , 5NDV_7 , 5NDV_M9 , 5NDV_N0 , 5NDV_N1 , 5NDV_N2 , 5NDV_N3 , 5NDV_N4 , 5NDV_N5 , 5NDV_N6 , 5NDV_N7 , 5NDV_N8 , 5NDV_4 , 5NDV_8 , 5NDV_N9 , 5NDV_O0 , 5NDV_O1 , 5NDV_O2 , 5NDV_O3 , 5NDV_O4 , 5NDV_O5 , 5NDV_O6 , 5NDV_O7 , 5NDV_O8 , 5NDV_L2 , 5NDV_O9 , 5NDV_Q0 , 5NDV_Q1 , 5NDV_Q2 , 5NDV_Q3 , 5NDV_2 , 5NDV_6 , 5NDV_S0 , 5NDV_S1 , 5NDV_S2 , 5NDV_S3 , 5NDV_L3 , 5NDV_S4 , 5NDV_S5 , 5NDV_S6 , 5NDV_S7 , 5NDV_S8 , 5NDV_S9 , 5NDV_C0 , 5NDV_C1 , 5NDV_C2 , 5NDV_C3 , 5NDV_L4 , 5NDV_C4 , 5NDV_C5 , 5NDV_C6 , 5NDV_C7 , 5NDV_C8 , 5NDV_C9 , 5NDV_D0 , 5NDV_D1 , 5NDV_D2 , 5NDV_D3 , 5NDV_L5 , 5NDV_D4 , 5NDV_D5 , 5NDV_D6 , 5NDV_D7 , 5NDV_D8 , 5NDV_D9 , 5NDV_E0 , 5NDV_SR , 5NDV_SM , 5NDV_L6 , 5NDV_L7
5NDW
Crystal structure of aminoglycoside tc007 bound to the yeast 80s ribosome Deposition Author(s): Djumagulov, M. , Prokhorova, I. , Urzhumtsev, A. , Yusupov, M. , Yusupova, G.
Date: 2017-03-09 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C Sequences Data: 5NDW_1 , 5NDW_5 , 5NDW_C5 , 5NDW_C6 , 5NDW_C7 , 5NDW_C8 , 5NDW_C9 , 5NDW_D0 , 5NDW_D1 , 5NDW_D2 , 5NDW_D3 , 5NDW_D4 , 5NDW_2 , 5NDW_6 , 5NDW_D5 , 5NDW_D6 , 5NDW_D7 , 5NDW_D8 , 5NDW_D9 , 5NDW_E0 , 5NDW_E1 , 5NDW_L2 , 5NDW_L3 , 5NDW_L4 , 5NDW_3 , 5NDW_7 , 5NDW_L5 , 5NDW_L6 , 5NDW_L7 , 5NDW_L8 , 5NDW_L9 , 5NDW_M0 , 5NDW_M1 , 5NDW_M3 , 5NDW_M4 , 5NDW_M5 , 5NDW_4 , 5NDW_8 , 5NDW_M6 , 5NDW_M7 , 5NDW_M8 , 5NDW_M9 , 5NDW_N0 , 5NDW_N1 , 5NDW_N2 , 5NDW_N3 , 5NDW_N4 , 5NDW_N5 , 5NDW_C0 , 5NDW_N6 , 5NDW_N7 , 5NDW_N8 , 5NDW_N9 , 5NDW_O0 , 5NDW_O1 , 5NDW_O2 , 5NDW_O3 , 5NDW_O4 , 5NDW_O5 , 5NDW_C1 , 5NDW_O6 , 5NDW_O7 , 5NDW_O8 , 5NDW_O9 , 5NDW_Q0 , 5NDW_Q1 , 5NDW_Q2 , 5NDW_Q3 , 5NDW_S0 , 5NDW_S1 , 5NDW_C2 , 5NDW_S2 , 5NDW_S3 , 5NDW_S4 , 5NDW_S5 , 5NDW_S6 , 5NDW_S7 , 5NDW_S8 , 5NDW_S9 , 5NDW_SM , 5NDW_SR , 5NDW_C3 , 5NDW_C4