PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9ZS4

S. marcescens cas10-csm bound to target rna

PDB DOI: 10.2210/pdb9zs4/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Serratia , Synthetic Construct

Deposited: 2025-12-22
Deposition Author(s): Dokland, T. , Dunkle, J.A. , Perdigao, C.C.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Literature

S. marcescens cas10-csm bound to target rna

Dokland, T. , Dunkle, J.A. , Perdigao, C.C.

Primary Citation of Related Structures: 9ZS4


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) A 816 Serratia , Synthetic Construct MNWLAASCHVAAFALLHNLKPLAQRAGIQDFPSPALANKLFAPLPESLSARADLHENTLTLLLDFAARLARGLPETPVSRGETGLIPLTHLLADDNHSAPAERCYSPLAPLGVDSLMPVTAALPTGERQAAYRQVYQALIEGLEAIPAAHRLQPSLWLDHLDSLWMTTCHALPDGDGASGISLYDQGKTTAALAVALWQHHARQATPEKEISLTPGDDARLLLIQADVFGIQELIFAQGNQTQKMAAKLLRGRSFQVSLLAETAALRVLETFDLPPVCQLINAAGKSLIVAPNLPDAAERLAGLRQRLDEWFLTHTYAQTGIGLCSTVAGSAEFLGEQAYGRLQNRLAQAMEQQKYQRFSLCAGDAPPPVFEGYLDQIAQGAGGEPCPMNGLHPVETTLNGLGCSRLAADQITLGHWINHGHWISHGERYARLLILRDSTATFSDDRCLHLTLFGYQVVAVSLKEDSGEFGELACNGSLRRCWDVSLPPEGTSLFQGYARRFINGWMPLAQGEYQPECYPGIEEALANGDIKTFDHLSCEDLYQDADQSLRGTCALGVLKGDIDNLGHLFRSGLPQPGFAKTIGLSRQIHLFFTLWLPHLCRKDPRFANTYTVFAGGDDFFLIGPWRSQQTLALTMAQDFARYSGHNPALHFSLGLVQAKPGYPVRALAAQAEAALKQAKQHPGKNAICLYNEVMGWPEYDALLACSEELARWREHDGYPLSSGLLYRLLALSEQSAEESEKPQAALWRSRLAYFLRRNLVDNVKVPTKENPAAFRHQLHLELFEKLEQHLKRHRQRYRVALQRHLYHYRTVPRGE
CRISPR system Cms protein Csm2 B 133 Serratia , Synthetic Construct MHHHHHHTTLDYFKRQLHKPEATFFDDDAQKFAEQLAQYGKKGKPTQLRRFYDQLQQLEQRINGDEEKLALYLPEIRMISAHLAYAKGRELISDEFCQTMQNLIRSINTCQHLKNGRLFFEATLGFLRAIRRD
CRISPR system Cms protein Csm2 C 133 Serratia , Synthetic Construct MHHHHHHTTLDYFKRQLHKPEATFFDDDAQKFAEQLAQYGKKGKPTQLRRFYDQLQQLEQRINGDEEKLALYLPEIRMISAHLAYAKGRELISDEFCQTMQNLIRSINTCQHLKNGRLFFEATLGFLRAIRRD
CRISPR system Cms protein Csm2 D 133 Serratia , Synthetic Construct MHHHHHHTTLDYFKRQLHKPEATFFDDDAQKFAEQLAQYGKKGKPTQLRRFYDQLQQLEQRINGDEEKLALYLPEIRMISAHLAYAKGRELISDEFCQTMQNLIRSINTCQHLKNGRLFFEATLGFLRAIRRD
CRISPR system Cms endoribonuclease Csm3 E 248 Serratia , Synthetic Construct MQLNNIQTLRATLVCETGLHIGGGDTALQIGGIASAVVRHPLTQQPYIPGSSLKGKLRSLLEWRAGVVGDTEGKVLSHQVYQQLIDDKKQAQALQALKILQLFGVSGGDKLSAEQAQQIGPTRLSFWDCEFDEHWLAQQGGRVQTEEKAENCIDRISGVALHPRFIERVPAGSRFDFRLTVRQLDGDSPDLLDTLLAGLKMLELDGLGGSISRGYGKVRFEALTLDGKDLQPRFEQLQPFKHTTQGAG
CRISPR system Cms endoribonuclease Csm3 F 248 Serratia , Synthetic Construct MQLNNIQTLRATLVCETGLHIGGGDTALQIGGIASAVVRHPLTQQPYIPGSSLKGKLRSLLEWRAGVVGDTEGKVLSHQVYQQLIDDKKQAQALQALKILQLFGVSGGDKLSAEQAQQIGPTRLSFWDCEFDEHWLAQQGGRVQTEEKAENCIDRISGVALHPRFIERVPAGSRFDFRLTVRQLDGDSPDLLDTLLAGLKMLELDGLGGSISRGYGKVRFEALTLDGKDLQPRFEQLQPFKHTTQGAG
CRISPR system Cms endoribonuclease Csm3 G 248 Serratia , Synthetic Construct MQLNNIQTLRATLVCETGLHIGGGDTALQIGGIASAVVRHPLTQQPYIPGSSLKGKLRSLLEWRAGVVGDTEGKVLSHQVYQQLIDDKKQAQALQALKILQLFGVSGGDKLSAEQAQQIGPTRLSFWDCEFDEHWLAQQGGRVQTEEKAENCIDRISGVALHPRFIERVPAGSRFDFRLTVRQLDGDSPDLLDTLLAGLKMLELDGLGGSISRGYGKVRFEALTLDGKDLQPRFEQLQPFKHTTQGAG
CRISPR system Cms endoribonuclease Csm3 H 248 Serratia , Synthetic Construct MQLNNIQTLRATLVCETGLHIGGGDTALQIGGIASAVVRHPLTQQPYIPGSSLKGKLRSLLEWRAGVVGDTEGKVLSHQVYQQLIDDKKQAQALQALKILQLFGVSGGDKLSAEQAQQIGPTRLSFWDCEFDEHWLAQQGGRVQTEEKAENCIDRISGVALHPRFIERVPAGSRFDFRLTVRQLDGDSPDLLDTLLAGLKMLELDGLGGSISRGYGKVRFEALTLDGKDLQPRFEQLQPFKHTTQGAG
CRISPR system Cms protein Csm4 I 326 Serratia , Synthetic Construct MPSPVAPAAAWQWLRLRLLPDSAFATALRGDTLFGQLCWYLRESLGEAGLNALLAGYHDQRPFAVISDPMLADHLPRPHLPEHRLGFAAADARARKQRKQQCWLPLAFAHQPLAEWGAHLTAAPEHHQHRSDVQMHNSINRQTLTTGGDDAFAPFGSEQHWFDVDTAWDLYLLHDKRLSAAQLTDALRAIGLLGYGKDASIGKGRFHLTPQPMPELPTPDGNPLRLTLAPCAPQQGHWHSADSFFSPLVRVGRHGAALVVQGHPFKNPLLLADSAAVLAPVTPDNRPFVGQGLGGNGRLSTALPQTVHQGYAPVIPVRFHHKAQPQ
CRISPR system Cms protein Csm5 J 559 Serratia , Synthetic Construct MTRDQTPRRHTACDSDNMQYFTLTCLSPVHVATGDSLNPGEYLIDENALYELGQGGLSPALTATQRSELLTILESNDPALPLTVQRFLAREAGKLKYAARRMCPLLPGISRYYQSRLGQVMQNDTKNKKQMINQLELMRHVGAALGAPYIPGSTLKGAIRTALVSALNQGQPLQAERRETDKLSSKVAQDAERQLLGFDTRRDSPRYRIEHDPFHWLQVGDAVSPAEHPPMLDYWLVRRQPFKRTEKQDNKADNMELSPVECLKPRQSPLHCQITVKTPPTALAIKNPRLKQWLGKVSQLAQQVNRITLPQCHHELAWLAEKHIGTDDVYAPGQNWVAQMQQLLRQLDDPLQRGEALLLRVGKYGGAISKTVAGWRHIARLGRQGTRTTYHPDVTTCTLALPQADALTQALPFGWVLLHQPDQPEVTEFVASHHDWCQQQQQRLDAHQQQQHTHRQQRQQLAQAREEEAQRLADKARQSKARQSIMSLAEQLASEQTFQHKNPNGPLRGQLATCVGCVATEGSAEEKAELCTLFDDILNYWGIKPGKDKKLTALRNKLL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA k 42 NA AUUAAGACCAUUUACAGAACCUGUUCCACUUAAUGAAGUUGC
Target RNA l 42 NA GCAACUUCAUUAAGUGGAACAGGUUCUGUAAAUGCGGAAGUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-12-22
Deposition Author(s): Dokland, T. , Dunkle, J.A. , Perdigao, C.C.