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FASTA Sequence PDB Format mmCIF Format
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9ZQ9

Nucleosome with an ssb at shl -2.8 in complex with the wgr domain of human parp2, class 1

PDB DOI: 10.2210/pdb9zq9/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2025-12-18
Deposition Author(s): Gregory-Lott, E.R. , Jayathilake, C. , Kim, T.H. , Virk, R.K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

9zq9
Literature

Nucleosome with an ssb at shl -2.8 in complex with the wgr domain of human parp2, class 1

Gregory-Lott, E.R. , Jayathilake, C. , Kim, T.H. , Virk, R.K.

Primary Citation of Related Structures: 9ZQ9


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H2A A 124 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2A B 124 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2B C 125 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct GMIPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B D 125 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct GMIPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H3 E 136 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 F 136 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 G 104 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 H 104 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Poly [ADP-ribose] polymerase 2 P 123 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct GKAPVDPECTAKVGKAHVYCEGNDVYDVMLNQTNLQFNNNKYYLIQLLEDDAQRNFSVWMRWGRVGKMGQHSLVACSGNLNKAKEIFQKKFLDKTKNNWEDREKFEKVPGKYDMLQMDYATNT
Ig-like domain-containing protein J 274 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MGSSHHHHHHSSGRENLYFQGNAMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRAGGGGSGGGGSGGGGSGGGGSMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSS
Ig-like domain-containing protein I 274 Drosophila Melanogaster , Homo Sapiens , Mus Musculus , Synthetic Construct MGSSHHHHHHSSGRENLYFQGNAMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRAGGGGSGGGGSGGGGSGGGGSMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (197-MER) m 197 NA GGGGTGGTCGCTGTTCAATACAATCACAGGATGTATATATCTGACACGTGCCTGGTCAGTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGGGAGACACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGATGGCCGCGTATAGAGTCCAGTCC
DNA (69-MER) k 69 NA GGACTGGACTCTATACGCGGCCATCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTGTCTCC
DNA (128-MER) l 128 NA CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTACTGACCAGGCACGTGTCAGATATATACATCCTGTGATTGTATTGAACAGCGACCACCCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-12-18
Deposition Author(s): Gregory-Lott, E.R. , Jayathilake, C. , Kim, T.H. , Virk, R.K.