9ZEO
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. vhh 1g1
PDB DOI: 10.2210/pdb9zeo/pdb
Classification: DE NOVO PROTEIN Organism(s): Artificial Sequences , Homo Sapiens
Deposited: 2025-11-30 Deposition Author(s): Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. vhh 1g1
Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.
Primary Citation of Related Structures: 9ZEO
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA Tracking Strand | i | 145 | NA | ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT |
| DNA Lagging Strand | j | 145 | NA | ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 98 | Artificial Sequences , Homo Sapiens | PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 98 | Artificial Sequences , Homo Sapiens | PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 83 | Artificial Sequences , Homo Sapiens | KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 83 | Artificial Sequences , Homo Sapiens | KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 111 | Artificial Sequences , Homo Sapiens | ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT |
| Histone H2A type 1-B/E | G | 111 | Artificial Sequences , Homo Sapiens | ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT |
| Histone H2B type 1-K | D | 95 | Artificial Sequences , Homo Sapiens | RSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-K | H | 95 | Artificial Sequences , Homo Sapiens | RSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Single-chain antibody (VHH) 1G1 | K | 124 | Artificial Sequences , Homo Sapiens | AEVQLVESGGGLVQAGGSLSVSCTASGRTVSSYAMGWFRQAPGKEREFVAGISRRGSRTYYVDSVEGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVRSRGSDYGQIDSYGYWGQGTQVTVS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-11-30 Deposition Author(s): Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.