9ZEN
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. vhh 1b2
PDB DOI: 10.2210/pdb9zen/pdb
Classification: DE NOVO PROTEIN Organism(s): Artificial Sequences , Homo Sapiens
Deposited: 2025-11-30 Deposition Author(s): Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.17 Å
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. vhh 1b2
Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.
Primary Citation of Related Structures: 9ZEN
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.2 | A | 97 | Artificial Sequences , Homo Sapiens | PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
| Histone H3.2 | E | 97 | Artificial Sequences , Homo Sapiens | PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
| Histone H4 | B | 79 | Artificial Sequences , Homo Sapiens | DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 79 | Artificial Sequences , Homo Sapiens | DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 111 | Artificial Sequences , Homo Sapiens | ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT |
| Histone H2A type 1-B/E | G | 111 | Artificial Sequences , Homo Sapiens | ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT |
| Histone H2B type 1-K | D | 93 | Artificial Sequences , Homo Sapiens | RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-K | H | 93 | Artificial Sequences , Homo Sapiens | RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Single-chain antibody (VHH) 1B2 | L | 119 | Artificial Sequences , Homo Sapiens | EVQLVESGGGSVQPGGSLKLTCAASRSIFRFAERSTEWYRQAVGKQRELVAAIMSGGTTNYADSVKGRFTISRDNAKSTIYLQMNSLKSEDTAVYYCHVQEYGRVWSDHWGQGTQVTVS |
| Single-chain antibody (VHH) 1B2 | K | 119 | Artificial Sequences , Homo Sapiens | EVQLVESGGGSVQPGGSLKLTCAASRSIFRFAERSTEWYRQAVGKQRELVAAIMSGGTTNYADSVKGRFTISRDNAKSTIYLQMNSLKSEDTAVYYCHVQEYGRVWSDHWGQGTQVTVS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA Tracking Strand | i | 145 | NA | ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT |
| DNA lagging strand | j | 145 | NA | ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-11-30 Deposition Author(s): Aguilar, R. , Armache, J.-P. , Arslanovic, N. , Becerra, G.C. , Chakraborty, U. , Cowles, M.W. , Folkwein, H.J. , Gloor, S.L. , Hunt, S.R. , Husby, N.L. , Kadonaga, J.T. , Kassavetis, G. , Keogh, M.-C. , Khan, L.F. , Maier, K.E. , Marunde, M.R. , Saccone, E.C. , Schomburg, N.K. , Sun, Z.-W. , Tyler, J.K. , Vaidya, A. , Venters, B.J.