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9Z3K
Sars-cov-2 s2 trimer stabilized in the early fusion intermediate conformation by circular permutation and clamping by gp41 (e-fics-v1)
PDB DOI: 10.2210/pdb9z3k/pdb
Classification: VIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2025-11-07 Deposition Author(s): Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Sars-cov-2 s2 trimer stabilized in the early fusion intermediate conformation by circular permutation and clamping by gp41 (e-fics-v1)
Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Primary Citation of Related Structures: 9Z3K
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SPIKE PROTEIN | A | 608 | Severe Acute Respiratory Syndrome Coronavirus 2 | MTRLTVLALLAGLLASSRASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRENDDDDKTGTGSTVQVRKLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQAQVEERINAIETAINVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLAKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGTNSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLPDPGSNEEWLQWDKEISNYTHIIYELIEESQKQQEKNEQELLELDKSSGGTDDDDKTGSLNDIFEAQKIEWHEQGSHHHHHHHH |
| SPIKE PROTEIN | B | 608 | Severe Acute Respiratory Syndrome Coronavirus 2 | MTRLTVLALLAGLLASSRASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRENDDDDKTGTGSTVQVRKLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQAQVEERINAIETAINVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLAKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGTNSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLPDPGSNEEWLQWDKEISNYTHIIYELIEESQKQQEKNEQELLELDKSSGGTDDDDKTGSLNDIFEAQKIEWHEQGSHHHHHHHH |
| SPIKE PROTEIN | C | 608 | Severe Acute Respiratory Syndrome Coronavirus 2 | MTRLTVLALLAGLLASSRASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRENDDDDKTGTGSTVQVRKLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQAQVEERINAIETAINVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLAKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGTNSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLPDPGSNEEWLQWDKEISNYTHIIYELIEESQKQQEKNEQELLELDKSSGGTDDDDKTGSLNDIFEAQKIEWHEQGSHHHHHHHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-11-07 Deposition Author(s): Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.