9Z08
Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing separate insert strand with sequence gacggtaatt
PDB DOI: 10.2210/pdb9z08/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Escherichia Coli , Synthetic Construct
Deposited: 2025-10-31 Deposition Author(s): Magna, E.N. , Shields, E.T. , Slaughter, C.K. , Snow, C.D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 4.22 Å
Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing separate insert strand with sequence gacggtaatt
Magna, E.N. , Shields, E.T. , Slaughter, C.K. , Snow, C.D.
Primary Citation of Related Structures: 9Z08
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*T*GP*CP*CP*CP*TP*CP*A)-3') | a | 21 | NA | ACCTGTGACAAATTGCCCTCA |
| DNA (5'-D(P*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*G)-3') | b | 21 | NA | TCTGAGGGCAATTTGTCACAG |
| DNA (5'-D(P*GP*AP*CP*GP*GP*TP*AP*AP*TP*T)-3') | e | 10 | NA | GACGGTAATT |
| DNA (5'-D(P*GP*TP*AP*AP*TP*TP*AP*CP*CP*G)-3') | f | 10 | NA | GTAATTACCG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Replication initiation protein | C | 263 | Escherichia Coli , Synthetic Construct | MRGSHHHHHHGSMAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-10-31 Deposition Author(s): Magna, E.N. , Shields, E.T. , Slaughter, C.K. , Snow, C.D.