9YYH
Ai-generated rna-guided nuclease r-loop formed state
PDB DOI: 10.2210/pdb9yyh/pdb
Classification: RNA BINDING PROTEIN Organism(s): Deinococcus Radiodurans , Synthetic Construct , Synthetic Construct
Deposited: 2025-10-29 Deposition Author(s): Doudna, J. , Esain-Garcia, I. , Skopintsev, P.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Ai-generated rna-guided nuclease r-loop formed state
Doudna, J. , Esain-Garcia, I. , Skopintsev, P.
Primary Citation of Related Structures: 9YYH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| AI-generated RNA-guided nuclease | A | 408 | Deinococcus Radiodurans , Synthetic Construct , Synthetic Construct | MIHRKAFVVRLYPNARQEELIERTLGSARFVYNHFLAERKAAYKESGKPLTYGQMSSLLTKLKQAPETAWLSEVDKFALQNSLKNLERAFQNFFRTLKKKGEKVGFPKFRKKKTGESFRTQFTNNNIQIGKGKLKLPKLGWVKTKGQQEIKGKVLNVTVKRVHEGHYEASVLVEVEIPELPEAPLLAAGVDLGIKNFAVVTDGEEFEKVENPKFLKKTEKRLARAQRRLSRRKKGSARWEKARTRLARIHKRIVNQRQDFLHKLTTGLVKTYQIIAVEDLNPKNMMKNHHLARAISDAAWGEFRRQLEYKAEWYGRTVAKVSRWFPSSQLCHVCGHKNPEVKDLSVRTWTCPSCGTTHDRDENAALNIRREALVAAGISDTLNAHGGYVRPASAGNGLRSENHATLVV |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (132-MER) | b | 132 | NA | GGUGGCUGCGGGAAUCUCAGACACCUUAAACGCUCAUGGAGGCUAUGUCAGACCUGCUUCGGCGGGCAAUGGUCUGCGAAGUGAGAAUCACGCGACUUUAGUCGUGUGAGGUUCAAGAGUCCCUUGGCGCCC |
| DNA (5'-D(P*CP*TP*AP*TP*TP*GP*AP*T)-3') | c | 8 | NA | CTATTGAT |
| DNA (5'-D(*GP*CP*CP*AP*AP*GP*GP*GP*AP*CP*TP*CP*AP*TP*CP*AP*AP*TP*AP*G)-3') | d | 20 | NA | GCCAAGGGACTCATCAATAG |
| DNA (5'-D(P*CP*CP*CP*C)-3') | e | 4 | NA | CCCC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-10-29 Deposition Author(s): Doudna, J. , Esain-Garcia, I. , Skopintsev, P.