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FASTA Sequence PDB Format mmCIF Format
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9YXX

Local refinement of ba.3.2.1 spike (3-rbd-down), rbd-b and ntd-a

PDB DOI: 10.2210/pdb9yxx/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2025-10-27
Deposition Author(s): Chen, Z. , Hu, Y. , Liang, B. , Wang, Y. , Xie, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.01 Å

9yxx
Literature

Local refinement of ba.3.2.1 spike (3-rbd-down), rbd-b and ntd-a

Chen, Z. , Hu, Y. , Liang, B. , Wang, Y. , Xie, X.

Primary Citation of Related Structures: 9YXX


Proteins
Molecule Chains Sequence Length Organism Sequence
SARS-CoV-2 BA.3.2.1 spike A 1271 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLLLVSSQCVNLTTTTQLPLAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNITRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFNNKSWMESESRVYSSAKNCTFEYVFQPFLMDLEGKQGNFTNLREFVFKNIDGYFKIYSKHTPIIVRDLPQGFSALEPLVDLPIGINITRFQTLLHRSYLTSGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESVVRFPNITNLCPFYEVFNATRFPSVYAWNRKRISNCVADYSVLYNFAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVISWNSNRLDSKADGNYNYWYRLFRKSKLKPFERDISTEIYQAGNNPCNGVKGFNCYFPLQSYSFRPTYGVGYQPYRVVVLSFELLHAPATVCGPKNSTNLVKNKCVNFNFNGLTGTGVLTDSNKKFLPFQQFGRDIADTTDAVRDPQTLDILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIRADQLTPTWRVYSTGSKGFQTRAGCLIGAKYVNNSYECDIPIGAGICASYQTQTRSRGSASSVDSQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPITYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICKQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSRDVDLGDISGINASVVNIQKEIERLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
SARS-CoV-2 BA.3.2.1 spike B 1271 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLLLVSSQCVNLTTTTQLPLAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNITRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFNNKSWMESESRVYSSAKNCTFEYVFQPFLMDLEGKQGNFTNLREFVFKNIDGYFKIYSKHTPIIVRDLPQGFSALEPLVDLPIGINITRFQTLLHRSYLTSGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESVVRFPNITNLCPFYEVFNATRFPSVYAWNRKRISNCVADYSVLYNFAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVISWNSNRLDSKADGNYNYWYRLFRKSKLKPFERDISTEIYQAGNNPCNGVKGFNCYFPLQSYSFRPTYGVGYQPYRVVVLSFELLHAPATVCGPKNSTNLVKNKCVNFNFNGLTGTGVLTDSNKKFLPFQQFGRDIADTTDAVRDPQTLDILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIRADQLTPTWRVYSTGSKGFQTRAGCLIGAKYVNNSYECDIPIGAGICASYQTQTRSRGSASSVDSQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPITYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICKQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSRDVDLGDISGINASVVNIQKEIERLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-27
Deposition Author(s): Chen, Z. , Hu, Y. , Liang, B. , Wang, Y. , Xie, X.