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FASTA Sequence PDB Format mmCIF Format
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9YTA

Cryo-em structure of sars-cov-2 omicron neutralizing antibody l52 with ba.5 rbd and sp1-77 fab complex

PDB DOI: 10.2210/pdb9yta/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus

Deposited: 2025-10-20
Deposition Author(s): Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G. , Zhang, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.27 Å

9yta
Literature

Cryo-em structure of sars-cov-2 omicron neutralizing antibody l52 with ba.5 rbd and sp1-77 fab complex

Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G. , Zhang, J.

Primary Citation of Related Structures: 9YTA


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 676 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus MFLLTTKRTMFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICAS
SP1-77 Fab Heavy Chain D 451 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus QVQLVQSGAEVKKPGASVKVSCKASGYTFTGTYIHWVRQAPGQGLEWMGWINPNSGGTNFAQIFQGRVTLTRDTSISTAYMDLNRLKSDDTAVYYCARDRVLYGRSFGWYFDVWGAGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPSCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLSLGK
SP1-77 Fab Light Chain E 213 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus DIQMTQSPSSLSASVGDRVTITCQASQDISDYLNWYQQQPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIGTYYCQQYDNLPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
L52 Fab Heavy Chain F 449 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus QVQLVQSGAEVKKPGASVKVSCKASGYTFTGHYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMDLSRLRSDDTAVYYCARRVWFHQGFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
L52 Fab Light Chain G 214 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus DIQMTQSPSSLSASVGDRVTITCQASQDISNNLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFAISSLQTEDVATYYCQQYDYLSWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-20
Deposition Author(s): Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G. , Zhang, J.