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FASTA Sequence PDB Format mmCIF Format
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9YSG

Cryo-em structure of sars-cov-2 omicron neutralizing antibody ab2-122 with ba.5 rbd and sp1-77 fab complex

PDB DOI: 10.2210/pdb9ysg/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus

Deposited: 2025-10-18
Deposition Author(s): Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9ysg
Literature

Cryo-em structure of sars-cov-2 omicron neutralizing antibody ab2-122 with ba.5 rbd and sp1-77 fab complex

Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G.

Primary Citation of Related Structures: 9YSG


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 676 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus MFLLTTKRTMFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICAS
SP1-77 Fab heavy chain D 451 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus QVQLVQSGAEVKKPGASVKVSCKASGYTFTGTYIHWVRQAPGQGLEWMGWINPNSGGTNFAQIFQGRVTLTRDTSISTAYMDLNRLKSDDTAVYYCARDRVLYGRSFGWYFDVWGAGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPSCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLSLGK
SP1-77 Fab light chain E 213 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus DIQMTQSPSSLSASVGDRVTITCQASQDISDYLNWYQQQPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIGTYYCQQYDNLPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
AB2-122 Fab heavy chain F 449 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYLYWVRQAPGQGLEWMGWINPKTGGTNYAQKFQGRVTMTRDTSISTAYMELNRLSSDDTAVYYCGRRDFWSHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
AB2-122 Fab light chain G 214 Mus Musculus , Severe Acute Respiratory Syndrome Coronavirus DIQMTQSPSSLSASVGDRVAITCQASQDIYNNLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQQYDYLSWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-18
Deposition Author(s): Alt, F.W. , Batra, H. , Chen, B. , Jonaid, G. , Kibria, G.