9YHY
Dna ligase 1 wild-type in complex with nick containing 3'-8oxodg:c captured at pre-catalytic stage
PDB DOI: 10.2210/pdb9yhy/pdb
Classification: LIGASE/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2025-10-01 Deposition Author(s): Caglayan, M. , Kanalelamparithi, B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.76 Å
Dna ligase 1 wild-type in complex with nick containing 3'-8oxodg:c captured at pre-catalytic stage
Caglayan, M. , Kanalelamparithi, B.
Primary Citation of Related Structures: 9YHY
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA ligase 1 | A | 668 | Homo Sapiens , Synthetic Construct | DPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTAAALEHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(8OG))-3') | b | 11 | NA | GCTGATGCGTG |
| DNA (5'-D(P*(AMP)P*GP*TP*CP*GP*GP*AP*C)-3') | c | 8 | NA | XGTCGGAC |
| DNA (5'-D(P*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | d | 18 | NA | GTCCGACCACGCATCAGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-10-01 Deposition Author(s): Caglayan, M. , Kanalelamparithi, B.