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9YD2

Ternary complex of dna polymerase i from bacillus stearothermophilus, large fragment, bound to dna containing a thymine dimer and datp

PDB DOI: 10.2210/pdb9yd2/pdb

Classification: REPLICATION
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct

Deposited: 2025-09-20
Deposition Author(s): Walsh, A.R. , Wu, E.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.249 Å

Literature

Ternary complex of dna polymerase i from bacillus stearothermophilus, large fragment, bound to dna containing a thymine dimer and datp

Walsh, A.R. , Wu, E.Y.

Primary Citation of Related Structures: 9YD2


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I A 581 Geobacillus Stearothermophilus , Synthetic Construct MAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*AP*AP*GP*GP*AP*CP*AP*GP*TP*(DDG))-3') b 11 NA CAAGGACAGTG
DNA (5'-D(*AP*(TTD)P*CP*AP*CP*TP*GP*TP*CP*CP*TP*TP*G)-3') c 15 NA ATCACTGTCCTTGAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-09-20
Deposition Author(s): Walsh, A.R. , Wu, E.Y.