9Y61
Cryo-em structure of ternary complex nsd2-pwwp1:crbn:ddb1 in complex with nsd2-ldd, an ldd degrader
PDB DOI: 10.2210/pdb9y61/pdb
Classification: LIGASE Organism(s): Homo Sapiens
Deposited: 2025-09-06 Deposition Author(s): Fang, W. , Pagarigan, B.E. , Zhu, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Cryo-em structure of ternary complex nsd2-pwwp1:crbn:ddb1 in complex with nsd2-ldd, an ldd degrader
Fang, W. , Pagarigan, B.E. , Zhu, J.
Primary Citation of Related Structures: 9Y61
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone-lysine N-methyltransferase NSD2 | A | 174 | Homo Sapiens | MAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAEHHHHHH |
| Protein cereblon | B | 467 | Homo Sapiens | MSYYHHHHHHDYDIPTTGLVPRGSMMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-09-06 Deposition Author(s): Fang, W. , Pagarigan, B.E. , Zhu, J.